RNA id: TU23671


Basic Information

Item Value
RNA id TU23671
length 290
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G15927
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1215316 ~ 1215605 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTTTATGagtaaataatcattttgattATCCCTGTAAGTTAGTTTAAGAATTAAATGTGGCGCTGGAGACACAAACGGGATCGTTCTGAACCGCCTTATTAGACGGAAATAATCAGCGTTTTGCTTTAAGTTCAAAAAAGAACGCAAAAAAGGCGAAGGCGCGCGCGAATATTAATTATCAATCAGCGCGGGTTTAACTGATTTTAATTCAAACGAATAAAAGAACGCAATGGCAATAATAATTTCGGAACTAGCAccattatgcattattatttatatatcaccGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23669 lncRNA upstream 1688 1213325 ~ 1213628 (+) True G15925
TU23652 lncRNA upstream 62088 1152825 ~ 1153228 (+) True G15911
TU23621 lncRNA upstream 81524 1120640 ~ 1133792 (+) True G15886
TU23622 lncRNA upstream 83841 1129892 ~ 1131475 (+) True G15887
TU23624 lncRNA upstream 92016 1121340 ~ 1123300 (+) True G15889
TU23674 lncRNA downstream 24741 1240346 ~ 1241047 (+) True G15929
XR_006248071.1 lncRNA downstream 63658 1279263 ~ 1281171 (+) True LOC122330723
XR_006248053.1 lncRNA downstream 167643 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA downstream 167643 1383248 ~ 1384764 (+) True LOC122330682
TU23726 lncRNA downstream 198610 1414215 ~ 1415199 (+) True G15967
XM_043226742.1 mRNA upstream 17278 1188018 ~ 1198038 (+) True kcnj4
XM_043227216.1 mRNA upstream 35975 1176232 ~ 1179341 (+) False LOC122330304
XM_043227223.1 mRNA upstream 35975 1176572 ~ 1179341 (+) True LOC122330304
XM_043226462.1 mRNA upstream 39245 1160237 ~ 1176071 (+) True LOC122329844
XM_043226863.1 mRNA downstream 1916 1217521 ~ 1224917 (+) True sox10
XM_043226420.1 mRNA downstream 14396 1230001 ~ 1234904 (+) True LOC122329817
XM_043230100.1 mRNA downstream 156927 1372532 ~ 1374290 (+) True LOC122332730
XM_043226714.1 mRNA downstream 160844 1376449 ~ 1380026 (+) False LOC122329966
XM_043226706.1 mRNA downstream 160861 1376466 ~ 1380026 (+) False LOC122329966
TU23529 other upstream 166056 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 206013 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 446344 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 579707 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 658235 553698 ~ 557081 (+) True G15563
TU23688 other downstream 75364 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 175134 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 180242 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 343782 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 400103 1615708 ~ 1646532 (+) False G16003

Expression Profile