RNA id: TU23696


Basic Information

Item Value
RNA id TU23696
length 1033
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G15944
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1485571 ~ 1490779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTGGTATATTTACCACAGGAAATGATCTTCATGGAACCTGATCTGCTCTTAACATCCTAATGATGTTTGGCATAAAAGGTCGCTTTAGAAACAATCCTCCTGTAATGAGCATATCCTCAGACACACGTACGATCTTCTCCATCGGAGAGCGATGAAGACTCACCCTGCCAGAAGGAGAGGAAGATGACGGATTTGACCATGAGGAACTTCAGCATGGGGCCGTACGGCTCCAGAAGATCCCGGGTGGCGAAGtagaagaggaagagagcgtagagagagagactgaccGAGACGTTATAGATGATGGTCACGTATAAATAACCACTGGCCGCActgaaacagagacagagacgagGTTCACtaccggtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgagtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtctctctgtctgtgtgtgtgtgtctctgtctctgtgtgagtgtctctgtctgtgtgtgtgagtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgagtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgagatgcacAGACACACTTGAAGTCTCCGTCTCTGTATTTCCCGAAGGCCTGTAGGATGACGGTGATCACGGCCATCAGAGGTTTCACCACACAGAACTGCAGCGTCGCCTGTTGGCAGGTGAGCAGCAGAGCCGTCCAGGTGAAGATCCCGGAGATGGTTTGAGCGGCGGGGGTCATGAGGAAGATGGGCGTCTCGGGGGCCACCGCCGGCGTCTCCCACGACCCGTTGTGACCCCCAGGGGCCACCGTAACGACCCCGGGCCCTGGCGCCATGCCAACCAGAGAGCCGTTCCCCGAGCGCTCGGATACGGACACGCCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23731 lncRNA upstream 43829 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 70372 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 100677 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA upstream 100807 1383248 ~ 1384764 (+) True LOC122330682
XR_006248071.1 lncRNA upstream 204400 1279263 ~ 1281171 (+) True LOC122330723
TU23779 lncRNA downstream 124381 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 129128 1619907 ~ 1865229 (+) False G16002
TU23788 lncRNA downstream 198263 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 279978 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 286207 1776986 ~ 1989269 (+) True G16028
XM_043226504.1 mRNA upstream 22318 1456950 ~ 1463253 (+) True LOC122329871
XM_043226529.1 mRNA upstream 22318 1456950 ~ 1463253 (+) False LOC122329871
XM_043226514.1 mRNA upstream 22318 1456963 ~ 1463253 (+) False LOC122329871
XM_043226521.1 mRNA upstream 22318 1456963 ~ 1463253 (+) False LOC122329871
XM_043227058.1 mRNA upstream 32487 1450238 ~ 1453084 (+) False LOC122330185
XM_043226144.1 mRNA downstream 17714 1508493 ~ 1516411 (+) True LOC122329679
XM_043226155.1 mRNA downstream 26729 1517508 ~ 1525476 (+) True LOC122329687
XM_043227300.1 mRNA downstream 67572 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226042.1 mRNA downstream 76566 1567345 ~ 1579821 (+) True LOC122329645
XM_043226055.1 mRNA downstream 99899 1590678 ~ 1601654 (+) True LOC122329650
XR_006247969.1 other upstream 83403 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 92721 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 194007 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 436311 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 476268 1005995 ~ 1009303 (+) False LOC122330135
TU23776 other downstream 68608 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 124929 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 125457 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 128533 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_273 other downstream 130144 1620923 ~ 1620995 (+) False trnar-ccu

Expression Profile