RNA id: TU23709



Basic Information


Item Value
RNA id TU23709
length 965
RNA type TUCP
GC content 0.43
exon number 3
gene id G15955
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1390739 ~ 1392850 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tcgATTCTATTAATGTCAGTCAAGTTTTAGAAACTATACCGAACGCAATGTGAATCAATGAATTGCACAGCCCTGAAGAACACAGGAAAACatggtgaaataaaaaaaaagctagattTACGGGAACAAGGAGTTCAACGACTCTGGATGCAAGCCAACccgagaagaagaagaagaagaagaagaacgcTTTGCGCTGAACGTTCCCGCCTTTAACTATTTCCGCGGAAAAACAAATGCCAGCTCACTTCAAAACCAACCACCTCCTTTTTTCTGTAAGTGACAAGAAAAGCGCGAAGAGCGCGAGCTTCTCGAGCTTCTCCCTTTCTCCCAGACATCACCTGAGAAACTGGATGTCCGAGACTAcactTTTGATTTCTAAGCCCCATCGCAGAAACAAAGGAATGTTAGAATGCATGGAAATTTGAATTTGGTGTTACTGGGAAAAATAGGAGCCGGGAAAAGTGCCTCGGGAAACACAATATTGGGAAGACAAGCGTTTAAATCAAAGGGAAGTTTCAGTTTAGTCACACAAGACATAGCTGTGGAAACTGGGACCGTCTGCAAACAACGGGTCACCGTTTATGACACACCGGGATTATCTAACGCGAAGCTGAGCGCTGATAAAATCCAGAAGATGCTTGACATTTTCAAGACATGCGAATCGGGTCTCTGCGTGTTCCTGCTGATCATCAAAACCGGCAGATTTACCGAAAAAGACAGACTGATCGTGAAGAGAATCGAGGAGCTGCTGGGAGAAACACGTTTAAAGAAAACCTGGATCGTCTTCACTGAAGGAGATCAGCTGGAGAAGGAGAAGATGGCGATTGGTGAATTCATCTGTGAGAATAAACAACTGGAGAGACTTGTGAAAGAATATGATGAGAGATACCATGTGTTCAACAACATGGAAAAAGGCCTCACCAGACAAGTTCAAGAGCTGCTTgggaaaatatataaagtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006248053.1 lncRNA upstream 5845 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA upstream 5975 1383248 ~ 1384764 (+) True LOC122330682
XR_006248071.1 lncRNA upstream 109568 1279263 ~ 1281171 (+) True LOC122330723
TU23674 lncRNA upstream 149692 1240346 ~ 1241047 (+) True G15929
TU23671 lncRNA upstream 175134 1215316 ~ 1215605 (+) True G15927
TU23726 lncRNA downstream 21365 1414215 ~ 1415199 (+) True G15967
TU23731 lncRNA downstream 48409 1441259 ~ 1441742 (+) True G15972
TU23696 lncRNA downstream 92721 1485571 ~ 1490779 (+) True G15944
TU23779 lncRNA downstream 222310 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 227057 1619907 ~ 1865229 (+) False G16002
XM_043227278.1 mRNA upstream 1040 1387484 ~ 1389699 (+) True LOC122330340
XM_043226714.1 mRNA upstream 10713 1376449 ~ 1380026 (+) False LOC122329966
XM_043226706.1 mRNA upstream 10713 1376466 ~ 1380026 (+) False LOC122329966
XM_043226711.1 mRNA upstream 10713 1376482 ~ 1380026 (+) True LOC122329966
XM_043230100.1 mRNA upstream 16449 1372532 ~ 1374290 (+) True LOC122332730
XM_043226812.1 mRNA downstream 2998 1395848 ~ 1408926 (+) True LOC122330032
XM_043227748.1 mRNA downstream 22767 1415617 ~ 1418312 (+) True LOC122330593
XM_043227058.1 mRNA downstream 57388 1450238 ~ 1453084 (+) False LOC122330185
XM_043227052.1 mRNA downstream 57389 1450239 ~ 1453082 (+) True LOC122330185
XM_043226504.1 mRNA downstream 64100 1456950 ~ 1463253 (+) True LOC122329871
TU23688 other upstream 99175 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 341479 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 381436 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 621767 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 755130 625365 ~ 635609 (+) False LOC122330407
XR_006247969.1 other downstream 2997 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 166537 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 222858 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 223386 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 226462 1619312 ~ 1865229 (+) True G16002

Expression Profile