RNA id: TU23731


Basic Information

Item Value
RNA id TU23731
length 235
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G15972
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1441259 ~ 1441742 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attatcttttaaacaaaacagtgaGAATAAGTTATTCGTGTTGAATTCATGTTTAGTTTTGTTGATATTGcacacttttaatttttttggtattGCATTGTTGAAAGTGGCGTCTTTAAAGACGCGAATGTCTTGCTGGACGTggaattagatttaatttcattaaatgcattttctcgAGCTAACGACATGAGGACATGCTAAGCTAGCGCAGTTTAATGGCCCTGGATAAAAC

Function

GO:

id name namespace
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23726 lncRNA upstream 26060 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 56365 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA upstream 56495 1383248 ~ 1384764 (+) True LOC122330682
XR_006248071.1 lncRNA upstream 160088 1279263 ~ 1281171 (+) True LOC122330723
TU23674 lncRNA upstream 200212 1240346 ~ 1241047 (+) True G15929
TU23696 lncRNA downstream 43829 1485571 ~ 1490779 (+) True G15944
TU23779 lncRNA downstream 173418 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 178165 1619907 ~ 1865229 (+) False G16002
TU23788 lncRNA downstream 247300 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 329015 1770757 ~ 1979709 (+) True G16027
XM_043227748.1 mRNA upstream 22947 1415617 ~ 1418312 (+) True LOC122330593
XM_043226812.1 mRNA upstream 32333 1395848 ~ 1408926 (+) True LOC122330032
XM_043227278.1 mRNA upstream 51560 1387484 ~ 1389699 (+) True LOC122330340
XM_043226714.1 mRNA upstream 61233 1376449 ~ 1380026 (+) False LOC122329966
XM_043227058.1 mRNA downstream 8496 1450238 ~ 1453084 (+) False LOC122330185
XM_043227052.1 mRNA downstream 8497 1450239 ~ 1453082 (+) True LOC122330185
XM_043226504.1 mRNA downstream 15208 1456950 ~ 1463253 (+) True LOC122329871
XM_043226529.1 mRNA downstream 15208 1456950 ~ 1463253 (+) False LOC122329871
XM_043226514.1 mRNA downstream 15221 1456963 ~ 1463253 (+) False LOC122329871
XR_006247969.1 other upstream 39091 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 48409 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 149695 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 391999 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 431956 1005995 ~ 1009303 (+) False LOC122330135
TU23776 other downstream 117645 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 173966 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 174494 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 177570 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_273 other downstream 179181 1620923 ~ 1620995 (+) False trnar-ccu

Expression Profile