RNA id: TU23773


Basic Information

Item Value
RNA id TU23773
length 482
RNA type TUCP
GC content 0.52
exon number 6
gene id G16003
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1559387 ~ 1649494 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGGACTCGCAGAACCTGATCGGGATCAGCATCGGGCGGAGGAGCTCAGTTCTGTCCCTGTCTCTACATCGTCCAGgtgtttgATAACACTCCTGCCTCTCTGGACGGGACTCTGGCCGCCGGTGACGAGATCACGGGAGTCAACGGCAAACCGGTGAAAGGAAAGACTAAAGTGGAGGTGGCCAAGATGATCCAGGCGGTGCAGGGGGAAGTCGTGATCCAGTACAACAAACTGCAGGCCGACCCGAAGCAGGGCAAGTCTCTGGATATCGtgctgAAGAAGGTGAAGCATCGTCTGGTGGAGAACATGAGTTCGGGGACCGCAGACGCTCTGGGACTCAGCAGAGCCATCCTGTGCAACGATGGTCTGGTGAAGAGgctggaggagctggagaagACCGCTGAGCTTTATAAAGGGCTGATGGAGCACACCAAGAGACTGCTACGAGCTTTCTCTGAGCTCTAGCAGACCCACAGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23779 lncRNA upstream 179 1615160 ~ 1615529 (+) True G16004
TU23696 lncRNA upstream 124929 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 173966 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 200509 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 230814 1383248 ~ 1384894 (+) False LOC122330682
TU23788 lncRNA downstream 42510 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 124225 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 130454 1776986 ~ 1989269 (+) True G16028
XR_006248080.1 lncRNA downstream 178258 1824790 ~ 1826317 (+) True LOC122330751
TU23825 lncRNA downstream 178552 1825084 ~ 1826048 (+) False LOC122330751
XM_043226055.1 mRNA upstream 14054 1590678 ~ 1601654 (+) True LOC122329650
XM_043226042.1 mRNA upstream 35887 1567345 ~ 1579821 (+) True LOC122329645
XM_043227300.1 mRNA upstream 49766 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226155.1 mRNA upstream 90232 1517508 ~ 1525476 (+) True LOC122329687
XM_043226144.1 mRNA upstream 99297 1508493 ~ 1516411 (+) True LOC122329679
XM_043227680.1 mRNA downstream 13989 1660521 ~ 1663598 (+) True LOC122330554
XM_043227139.1 mRNA downstream 33782 1680314 ~ 1686977 (+) True LOC122330255
XM_043227003.1 mRNA downstream 46524 1693056 ~ 1700663 (+) False LOC122330144
XM_043227012.1 mRNA downstream 48453 1694985 ~ 1700663 (+) False LOC122330144
XM_043226996.1 mRNA downstream 48690 1695222 ~ 1700663 (+) True LOC122330144
XR_006247969.1 other upstream 213540 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 222858 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 324144 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 566448 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 606405 1005995 ~ 1009303 (+) False LOC122330135
unassigned_transcript_274 other downstream 4124 1650656 ~ 1650728 (+) True trnar-ccu_1
unassigned_transcript_275 other downstream 219181 1865713 ~ 1865785 (+) True trnar-ccu_2
TU24128 other downstream 410149 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 410149 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 412145 2058677 ~ 2063784 (+) False G16222

Expression Profile