RNA id: TU23788


Basic Information

Item Value
RNA id TU23788
length 2195
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G16008
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1689042 ~ 1704676 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcaatgttttttttctacaaatttGGAAATCACTTTACAGGGAGGTTGATATacttgatgatgatgatgattattattattattattattattatcatgtgtTTCCCCTCCACTGTGACTCTCTGAGGCGTGGACCTGCAGCAGAGCCGATGTCTCGGGTCTGAACTCTGACTCACTCTGAGATGTGCAGGAAGATGTCCTCCCCGCCGTGAGCCGGCCTGATGTGTCCGTGACCCTGCGACCTCGAGAAGTCTTTACACACGCCCTTGAAGACGGGCCCCGCGTTCGCCCGGACGCTcctgcagacacacagagacggAGACTTCATCGACCGAAGTTCAGCTCACAGGTTCCCTAGAAACGTTAGTTTTCGGTTCCCGCAACATTCCCCGGGAAGGTTATGTTCGGAGAACGTTTCGGGAACGTTGCGACTGACTTACGCAGAGTACGTGCGCATGCGCTTGGTGGGCAGCGGGCTCGAGAGCTCCCCGGCTCGTTCCCAGACGCGGCTGCCTTCTCGCGGGAACGGGAACGACAGCGACAGCGGCGGGGAGCGCGGAGACGGGTCCGGTTCCGCCATGATCACCGGAAGAAGACCTGTGAGGAGACACTGAAGTCACATCACGTCCCGCGCGGGTTATGAAGGGCGTTAGCGACGTGCAGTTAAACATTtagtcttctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtttataacatttattataaaaaaaactataaagagagaaaatgagaaaaagaaatatataaaaaaagttaaatttatttaaaacggcAATTAGACTACTAAAATCCATAAACACTGGAAgcacattattattttccaccatttaaaaaaagaaaactaaatttgaaaacccatgaaaaacaacaacaatactcTAGCGATGCTAAAGCTGCTTCTACTAGAGGACTCAAACAAATCATGCTCACGCCACAATGCTTTTaccaatgcaaaaatgtatctaaaaatgcattattattactttaataattcGTTAAAAATGCGATAATGAATGCATCATTggtaagaacaaaaaaaaaaacatttacggAGAAATTTGTTACCCTTTTCTTTTAAGTAATGCTGAGCTGCCCGActaaaaaatttgtttaaaattattaaagaaaaataagacgCTCGTTAGAAATCTCTAATCTGAGGTAAAGATGAATCGCACATTATTGCCTGGATTAAACCCTGAAAACAAACCAGTCGTTAGACTCGCCTTAAATGAATCGTCCAGTTGACTGCCGTGAAGATGCGTTTGAACGTGTGTTAAAAATCTGCACGATAGAAATATATCGCTTTTTACACGGTAAGGTCATCCCGGAAGAACAGCGACACTAGTGGACGGACACAAGCGTGTATTTACAGACGCGCCTTTCTTCCGAATCTTCGCGAACCGCCACTCTCCGATCCGCGCCTACCCTAGAAGTGCTCTCGATGTCGCAGAGCGAAGAAAACGCCTGCTTCGTGTCGAGGGTCATGCGCttgttttatacaaaaaaaactcgAACACAgacaaagtgcaaaaaaaaggaCGAAACGGGTTAAAAAGTAGCCGAAAACAGTCAAAAAGTCGCGTTTTTCGCGACGAAACGCTCTCGGGGTGAACGCTAACCCGCCGTCCGCCCACGATTTTTCCAGTCGGCCGCATTATCTCGTCTTCATACTGAATGAACCTCTAAAAACTCGCTGCTCGGGTCGCGTGGGGGTCGTGGAGAGGGCAGGATGAGGTATgaggaggtcagaggtcaaaggttaTGCTGTGTTGTCGTGTGTTTTGCGTCGTCCAGACCCTTAAAACGTCCTCCTGAATAAACACGCGCTCGCGTCGCTCTCGTCCGCTTCCCCCCGCGCGGCGCCGCATTACCCACAATCCCCGGCCGTGTAACTGCGGTGTGAATTATAAGGGAGACTGATGCGTGTCGGGGCGAAGCGCGTCCCTCACAGCGAGCCGTATTTGGCTTCGTACAGCGACATGATCTTCTTGCAGCGGCCGCAGTCTTTGCGCAGCTCGGCCACTTCCTGTCGCAGCGCGGCGTTTTCCCGCTCCAGGAAGGAGGCGCGCACGGCGATCTGGTTCTCTTTCAGGCGCCGGGCGTCGCGAGAGCGCTTCGCCGCCACGTTGTTCTTCTTCCTCCGCGACCAGTACTTCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23779 lncRNA upstream 73513 1615160 ~ 1615529 (+) True G16004
TU23696 lncRNA upstream 198263 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 247300 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 273843 1414215 ~ 1415199 (+) True G15967
XR_006248052.1 lncRNA upstream 304278 1383248 ~ 1384764 (+) True LOC122330682
TU23818 lncRNA downstream 66081 1770757 ~ 1979709 (+) True G16027
TU23819 lncRNA downstream 72310 1776986 ~ 1989269 (+) True G16028
XR_006248080.1 lncRNA downstream 120114 1824790 ~ 1826317 (+) True LOC122330751
TU23825 lncRNA downstream 120408 1825084 ~ 1826048 (+) False LOC122330751
TU23827 lncRNA downstream 150219 1854895 ~ 1855684 (+) True G16033
XM_043227139.1 mRNA upstream 2065 1680314 ~ 1686977 (+) True LOC122330255
XM_043227680.1 mRNA upstream 25444 1660521 ~ 1663598 (+) True LOC122330554
XM_043226055.1 mRNA upstream 87388 1590678 ~ 1601654 (+) True LOC122329650
XM_043226042.1 mRNA upstream 109221 1567345 ~ 1579821 (+) True LOC122329645
XM_043227300.1 mRNA upstream 123100 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226184.1 mRNA downstream 6619 1711295 ~ 1727693 (+) True LOC122329718
XM_043230436.1 mRNA downstream 23694 1728370 ~ 1729997 (+) True LOC122332958
XM_043227073.1 mRNA downstream 162948 1867624 ~ 1870610 (+) True LOC122330213
XM_043230813.1 mRNA downstream 221071 1925747 ~ 1941793 (+) True LOC122333258
XM_043226579.1 mRNA downstream 298003 2002679 ~ 2010431 (+) True rangap1a
unassigned_transcript_274 other upstream 38314 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 39548 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 39548 1616236 ~ 1649494 (+) True G16003
TU23773 other upstream 42510 1615708 ~ 1646532 (+) False G16003
TU23775 other upstream 42510 1644778 ~ 1646532 (+) False G16003
unassigned_transcript_275 other downstream 161037 1865713 ~ 1865785 (+) True trnar-ccu_2
TU24128 other downstream 352005 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 352005 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 354001 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 407361 2112037 ~ 2114339 (+) True G16223

Expression Profile