RNA id: TU23818


Basic Information

Item Value
RNA id TU23818
length 2326
lncRNA type read_through
GC content 0.42
exon number 2
gene id G16027
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1770757 ~ 1979709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgaaaaatgtcaaattatttcatttattttgtatacatacatacatacatacatacatacatataacaGCATGTAGccttcaaatatttttaagttaagtaAACATTCCTCTTAAGAAATCCAGTGTAAAGCAAGTGTCATAAAACAGTTACGCTGAAGATGACAAAATAAAGGGTCACTTAATTTTTTGTACTACGTATTCAGTCtcacaataaaatatgattatcaCTCCTGAAactgtgcagtgtgtgtgctCAAGAAGcatgaaatgcatattttatttaaactgtgaaTAGATTATAAAGAGAGCACTCCCTTGATAATCACTGGAAGATGTTAATGGAGTTCTGCACTCTTGTGAAAAGTTGCCTTCACTGGGAAGGTATTCTCtcaattttattgtgtttatactttaattaaataatgaccGGATACACCAATGTGCAGAACAAAACCATTGtcagtgtttaaaaatactgaatgCACAGCAGTGTTTTATAGAATCTGCCTACTGGTGGGTACTAAACTGATTCTGTACACTGATTCAGTACCAATACTATTGACTAAGGGCAATATCGCAGTAATAATCGTAATGTGATTCATCTCACGATTATGAATGCACTATTGCATAACTTATCAGTGAACTACAGCTCTGTGTGACGGACATTTACTACTAATcacaaaaactgttttactgAAGAATGCATGAAACTTGCATGGGGATAAGCAACTACTTTCTCACTACATACTGGCtcaaaataacttctttttttaagaatcgTACATCACTAGCATCTGGTGTTAGATTTCCCCAATAGAGTCATCGCCAAATTTTTTGACCAACACcaaaaagagaatgaaagcTGACAATTATCCATGGGAGACCAGATTTCTTGAAACCAGCTCATGCATCTCCTTTGAAGTTTTCCTTTATCTTTGGTgtgttacaagctgtttgtgcatagactaaagtctcaaacccaaagagatactctttttaaaagttaagaCTCTACCATGCCTTCCTAAAACACCTTCTAAAACTCACCACCATCACTGTGTGGGAAGATTTTATGACCAcaatgtttatgcaaagaaagaaggcagagCTACTATTTTTGATGTAGCGTTGCTGccggcgccatgttctggagatgctATGTTTCGTTGAAAGTTCCAGAACACTGTTCCAAAACAGTTTGACACAAATATAAGAAAGtatacagtgattttttttttttacggaagAATGATTCTTAAACCTGCAGAGAGACCTATGAAGTCTGTTTCTAAAAAGTGGGTCAATACCAActttgcaaggacagtctggctCTTCTGACTCACAGCCTAtaagtatgttttattatttaaagaaccAATTGAGCGGTGTAGAGTAGAGGTTGGATTTTGTATCATATTTTGACATGGTGTTGTGTTTACATAGatgtcattataatcagtaattatgtccctaactggatgcaacaaatgacttgtttcaaatgtcatttattgttttttcacCATGACAGGTCATTgcattatagttatatatattttcatcacGCGCTTGAggtatttggccaatcacaacgcactggataACTGGCCAATCAGCTGGCTTCTGAAAACAATAAGCTTTGTAAACATCAGAAAGGCAGGGCATAGGGCAGCAACAATAAtttacagtatgtggaaaatacagttttttaaccttaaaccgcataaatacattgcattacaccaaatacacataATAATGTTCTCTTTAGCGAGGTCATATGACCCCATTAATGTTACAGTTTGGTCCCTTTTAGAGGAATGACCACTTTTCTGACATTTGTCAGACTACAGTATTCATTTAACTGGTACAATTTTCAAATCATTACACCAGAAAAATGGAAAGACAGTGTCGGTGAAGGtggttgtgaatgtgtgtagatgtgtgttaGTTACAGGATCAGAGAAGGACAGTGTTCCTCTGTCATAGTCCAGATACACCCTCACCCTCTCCAGCCTCTGATTAACAGGAAAACCAAACCGCTCATCCAGTCCATACTGCACCCACCAGACCTCACTGTTAAAGAAAACAGGTCCCTTCCTCTGGTTTGATGCTGTAGTTGCTCCAAGACTCCAGTATAAACTATCTTTAACCTCCACGTCCCAGCAGTGTGTCCCAGAGTTAAAACCCTCTGAACCCAGAACACAGGTATACTCGTCAAATCTCTCTGGATTATCAGGAAATAGTTGACTGCTCAAACTCCATCTCAGACTGGTCAGATCATCAGACAGGACAAGAGATGGATGAGCAGTGTTTGGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23788 lncRNA upstream 66081 1689042 ~ 1704676 (+) True G16008
TU23779 lncRNA upstream 155228 1615160 ~ 1615529 (+) True G16004
TU23696 lncRNA upstream 279978 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 329015 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 355558 1414215 ~ 1415199 (+) True G15967
TU24127 lncRNA downstream 44639 2024348 ~ 2320138 (+) False G16222
TU24151 lncRNA downstream 48685 2028394 ~ 2030843 (+) True G16233
TU24161 lncRNA downstream 63942 2043651 ~ 2046384 (+) True G16243
TU24140 lncRNA downstream 70476 2050185 ~ 2056000 (+) True G16226
TU24129 lncRNA downstream 76972 2056681 ~ 2320138 (+) False G16222
XM_043230436.1 mRNA upstream 40760 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 43064 1711295 ~ 1727693 (+) True LOC122329718
XM_043227003.1 mRNA upstream 70094 1693056 ~ 1700663 (+) False LOC122330144
XM_043227012.1 mRNA upstream 70094 1694985 ~ 1700663 (+) False LOC122330144
XM_043226996.1 mRNA upstream 70094 1695222 ~ 1700663 (+) True LOC122330144
XM_043226579.1 mRNA downstream 22970 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 151509 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 180637 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 281901 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 287879 2267588 ~ 2270464 (+) True LOC122341669
unassigned_transcript_274 other upstream 120029 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 121263 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 121263 1616236 ~ 1649494 (+) True G16003
TU23773 other upstream 124225 1615708 ~ 1646532 (+) False G16003
TU23775 other upstream 124225 1644778 ~ 1646532 (+) False G16003
TU24128 other downstream 76972 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 76972 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 78968 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 132328 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 181136 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile