RNA id: TU23825


Basic Information

Item Value
RNA id TU23825
length 230
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC122330751
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1824790 ~ 1826317 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTCATCGGAGCATGAAACAAACACGTATAGGACACACTATTACAGAATATTGTTTAAAGCTGAAGTGAATATGAACGCATGTAGATGGACGGGCTTCGGGTGAGCTGAAGGACATTCAGAGACGATGGCTGACAGAGAAGGCAGATCGGGTGATCGGAGGACCAGGGAAAGACGTGAAAGGAGCCAGAGCATGGGAGAACGTCCCATGAGTAAATATTTGAATCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23788 lncRNA upstream 120408 1689042 ~ 1704676 (+) True G16008
TU23779 lncRNA upstream 209555 1615160 ~ 1615529 (+) True G16004
TU23696 lncRNA upstream 334305 1485571 ~ 1490779 (+) True G15944
TU23731 lncRNA upstream 383342 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 409885 1414215 ~ 1415199 (+) True G15967
TU23827 lncRNA downstream 28847 1854895 ~ 1855684 (+) True G16033
TU23807 lncRNA downstream 45232 1871280 ~ 1873520 (+) True G16017
TU23808 lncRNA downstream 45232 1871280 ~ 1891027 (+) False G16017
XR_006248070.1 lncRNA downstream 116641 1942689 ~ 1943729 (+) True LOC122330717
TU24127 lncRNA downstream 198300 2024348 ~ 2320138 (+) False G16222
XM_043230436.1 mRNA upstream 95087 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 97391 1711295 ~ 1727693 (+) True LOC122329718
XM_043227003.1 mRNA upstream 124421 1693056 ~ 1700663 (+) False LOC122330144
XM_043227073.1 mRNA downstream 41576 1867624 ~ 1870610 (+) True LOC122330213
XM_043230813.1 mRNA downstream 99699 1925747 ~ 1941793 (+) True LOC122333258
XM_043226579.1 mRNA downstream 176631 2002679 ~ 2010431 (+) True rangap1a
XM_043235918.1 mRNA downstream 305170 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 334298 2160346 ~ 2165693 (+) True LOC122333054
unassigned_transcript_274 other upstream 174356 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23776 other upstream 175590 1559387 ~ 1649494 (+) False G16003
TU23778 other upstream 175590 1616236 ~ 1649494 (+) True G16003
TU23773 other upstream 178552 1615708 ~ 1646532 (+) False G16003
TU23775 other upstream 178552 1644778 ~ 1646532 (+) False G16003
unassigned_transcript_275 other downstream 39665 1865713 ~ 1865785 (+) True trnar-ccu_2
TU24128 other downstream 230633 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 230633 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 232629 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 285989 2112037 ~ 2114339 (+) True G16223

Expression Profile