RNA id: TU24112


Basic Information

Item Value
RNA id TU24112
length 5361
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id G16218
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2143869 ~ 2150485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACATGAAAGGCTGAGAAAATATAAGTgcataaatctttaaaaatgacgACGAAACCGGAGCAAACGGGGGTCAGGATTCATCTATAAAACATTTGCAAGTGGCTCTGGAAACACAGATGTGCTGAACTCGCCTGGTTGAACTCCAGCACGTCGAGCAGGTCGAAGAGCTTGCGGTTCTTCTCGCTGTCCTTCAGTTTACAGTAATACTGCTGCAGACCGTGAAGAGTCAGCTTCGTCTCGTCGTCCACAAACACCTCCATCGGCTGAAAACAGACAGCACACGTCAGACAGGACGCTCTGTGTGCTTTAGAGCAAAGGTCGTTACACGCTTGATTCTGAAATCCACAACGTAAACCCCATGACCTCACAGTCATTCATAATTGGGACTGGGTTTAATTTTCAGCTTCTTTGCAAGGGTATATTAGACGTTTCAGAAGGTCTGAGTAGGACTGCATTATATGCATCACTATATCGCATGCACTATATatcttgtcagtaaagccaGTTCTTTGGTGGTAAATCTTGGCACTTAATATAATGCAGTCCTAACTCAGAGCCAACCGTACAAGCAGACGCCACAATCCCGAATGCCTCCTTCCAGCTCAATTGGACAgacagaacatttttttgtcCCTCTTTAAttggagaaaagaaaacaatcctCCTCACTGTGCGCGTTGTAGACTTTTGCGACAAAAACATTGGACTCAGTATGCAAGGTTTCTGTGCATGAAGTTCTAGGATGACGAATCTGGAAAAAGCAAGTGGACCTTGAGCTCCATGAAAATCATCATCAGGACTAATATGGACGCATACTTAATTTAAATCGCACTGTTTTGAACTAAAAACAATATACTATTTTTGCCGgtatttaaaatggttttaatcaATATTTCGTATTAATTTTTAGTGAAATGGTTTAGTTACTTGAACTGAGAAAATATTATCCAAAAAATGTTGAACAGTGTTGGAATTTTTTGTATTGacttcaatgaaaaaaatgttacatttggatttaaatgttttttatagtaAATGTTGGAGTTGTGTCtgttcagtttcagcttccatctgttATAGCATttcttgttctaggtcatgacatgcTTCTATCTTGGACTTCAGAGAAGCTGaaggaatgaagattctgacgcacaaaaagGTATGTAGCTAGTGATAACGACGAACGCGCTTGAAACCCTTGTTTGCCATTTGCTTTTTCTTATCTTGTCCtgtcctctataaataaagcaacttgtgatctgcgcttcggaggcaaaagagagaaacctgCTTTTTCCCCCGACAGCGCAGTCCTTAGAAGCAAAAAGCCAAAGaacttgttttatttcgcttgagttgatccttcctggtaaagagttGTTTGGGTGAAATGGTCTCAACAGTAAGTACAACTTAAACCTCACAAAACTGATGTAGGTTTACAGAACCTTGCTTTTAATTCTTGAACTAAAAACTACACCAAAACGACACTCACGTCCTGCATGAACTTGCGGCAGACGGGCCGAATCTCTTTGCTGAGGGTGGCGCTGAACATCATGCACTGCTTCTCATGAGGGGTCAGTCTGAAGATGTCCTGAACGTCACGTCTCATATCTAAAGAGAAACACGACTtttaaaaaccacacacactctcagctCAGCACAGTTCAGAGCGGACTCGGGCAGGACGCTCACCCAGCTGCTCCAGCATCTTGTCGCACTCGTCCAGAACGAAGTGCTTGACGTTCTTCAGGTTGAGGGTTTTGTTCCGGACCAGGGCGAGGATTCGGCCCGGCGTTCCCACCACGATGTGAGGGCAGCTCTTCTTCAGGACATCCTCGTCCTTCTTTATGGACATGCCGCCGAAGAACACGGCCACCTTCACCGTGGGCATGTACTTGGAGAAGCGCTCGTACTCCTTGCTGATCTGAAACGCCAGCTCGCGCGTGTGACACATGACCAGCACCGACACCTGCCGTCCACCGGCTCGATCTGCTGCAGGGTGGCGAGCACAAACACGGCCGTCTTTCCCATACCGGACTTGGCCTGGCACAGGATATCCATGCCGAGAATGGCCTGCGGGATGCACTcgtgctgcaCTTCAGACGGATGCTCGAAGCCGCAGTCCACGATGGCCCTCAGCAGCTCCGGCTTGAGCAGGAAGTCCCTGAAGCCCGAGCTGTGGATGGACACGTACGAGCCCTTCACCTCCTTCTTGCCCACCGGAGCGGCGCTCTCCGGGGCTCCTTGAGGCTCGTCGTCCTCTTCGTAATCCAGCAGCTCGTTGTCAACATCGTTCTCAGCCATTCTTTTGTTGCTAGGCAGCTAGTTCGGTGAACGAATCGGTTTATATGGGCCTCGACCACCAATATCCAAAAGAAGCTCTCAAAAATCAACGTAACGAACGTCTAAAGTACTTTTTCCTGCGTAAACATGCGAAATTCCGTCATGCCAAAAAACGCGTTAAAAGAGAGAACGGAGAAATTGGTTTAATTGTAAGAAACGCGCGGCGGACAATGGACCGGCGTTTAGCGATTTTCATACGTTAACGTTACACGAGAAAACGACCGAAAAAATTAAACCGCACGCGGGCTTACGTTTCGCACGATTTATCACCCCGACAATGCGGTaacataatactaaaaaaatatatccgCTACACATAACTTAACAAATAACAAACGCGCTCACACGCGCTTTCGCTTCGGTTAGCTAGCATTGCTAACGCGCTCAATGACACAACGCCTCGATCTCATATGAAGCTCGCCCGTTGGATACCCTTACAAGGTTATATACAATACAAACACGTTATGAGGAAACGTAtccatttctaaaataaataaaaataaaaaactacatTATAGTTACCTTCAGGTGACGGTGCGCGAGGAATACGGACACACGAACGCAGCTGTTGCCTCAAACCGCACGCGCCAGGCCGCAGTTTATACTACCGCGCGGAAATCCAGCCTCCTGAAGAACGCGCGCTCTGATTGGCGGAGCGTACGCGGCCGTTGGTTTAACGCAGGCTCCCGTTGGCTCACGAGCGTGCCAATTTAAATGTGGCAGTATCGTGATTGGACGTTGGTACTGGCACTTGGGGGCGTTGAAATCGCGCTCGCGTTGGGCGCGACTGAGCTTGGCGGGACTTTTGTAAgtgacagaaatgtttatttacattttggtaTGATTTAGGTTTAAAACTCAGGGTAATATCATGACTGACATGTTGCTTCATATCAAggaaaataatcaaatcaaatattatgGCGGAAAAATACCATAACTACACTATGACCTCAGATattatttcagattaatttGTTGTGGTAAACGAATATTGTAAACTAAAGTTTTCTTTCTATTTGTCTagttattacattaataaaatagacTGATTAGGTAACAGAATAAACAAAGTTAGATAATTGTGTTAAGTAATTCATGTATATGCAACCATTTCAGCATAAGCTTTAGATCTCGAGGTTTTAGACCAAACGTTTGAGCAGTACTGTAtatgaaaccaaaaaaatgctatgttatggtttttattatttagttagtGTAATTATACATCTCATCTTACACATAGAGTGTGCAAAACTATCTCACGTTTCATATTAATGGTGGATTATAACTGTCAGTCctactttttaaacaaagaccTACTAATTAATTGTACGTCTAGAATATTTTGGAGCAAAGACTAAATTTTGTCTCATTATTGTGGAGGTGGAAAAAATTTTACCGATAAAGTTCATGAAAATATAAGATCCACTGCACTAcatgtaaaacttttttaaataaaatcaattttacaaaaaatatacttcaaaacaACATACGGCGATCCATATTAGGACTGTAAAGGACATGCAGAAAGCAACCAAACATGCATAGTTTGCATTCTGTCATAAATGGAGATTCTGTCAGTatgtttttaggtttaaaagttttttagaaaaaaaattataatggaTGTTATGTTTTTGAACTTTAAGCACAAAAAGTAGTCGAAAAGTTTAGTCACCAAATATGAAAGTTAGCTTTTCAAAAATGAGAGGTTTAGAATGTCTTAATTGGGCTAGTGACAGTTACCTGGTTAAATATAGAAACATGTTTCTAATTTATCTTATGAGTGTATTCTTATGAGGTACATTTAAAGTCTTGGGAAATAACTGGCTTTTCCAGACtagttttagtaatattagttAGATATTCTTCACAAGTTCAGTCTGAAGCTGATGTTTTATATCCGAGATTCCAGTGCAGAGTGGAAGCTCCACTGAGCTGCTGAAAAGGTAGGAAAGCAGTCAGAATTAGGTCGTGAAGGTGGTTCAGAAGACGGGCAAGAGCTGGGCTGCTGTAGGACATCCCTGACCTGCCGAGGTAGGGTGTGCAGCAGCCAGGTTTCCACTTGCAAACCGCCTCCACGAAGCCCAAAACAACACCCCAGCTCGACCGGCAGTTGCTCTAGGCTGTTTCCACGTACATCCAGACGCGAAAGCTGAGGCAGGCCGCCAAAACCAGTGGGCAAAGACCCTAGAGAGTTATTCGCAACATTCAAGTTGCGAAGCTCTATGCACGTTTCAAACAGTTCCTTGGGGAGACGTTCAAGCCTGTTGCCACTTAGGTCTAGTTCGCTAAGAAGCTTCAAGGCTCCGATTTCAGCTGGCAGCTCTTCCAAAAGGTTTCCTGCCAAAAGCAGGCGTCGCAGCTTATGCAGTGTAAAGAGTGCCAAAGGTAGGTTTTGCATCTGATTGTGTGCCAAATCCAAGAGCTCCAGTGAGCGCAGCACTCCTACGCTGACCGGAAGAGCCAGAACGCGGTTATGTGCCAGTCGTAGGCAGGACAGACGCCTCAAATGCTGCAATCCTAACAGCTCTTCTAGAGTACGCAGACTGTTGTGTTGCATGTCCAAACTGCGTAGGCCTGTGAGCGCGAGCAGCGCTGATGGCAGCCTCTCCAACTGGCATCCTTGCAGTTGCACTTCAGCCAGTCCGGTCAAACGCCTCAGTCCTGTAAGTACCATTAACCTGGTGCCCTCGTTATATATCTCCAGTTTTAGCAGACTCCCTGCCAATTCGCTCAGCTCCCCTGGAACTTTCTGCAGCATGCCGCGCAGCACCAAGATGCGGAGATGACGCAGTTGTCGAAGGCTGCCAAGGCCCCATCCACGCCCCATGCCACCCTCATTGCTCAACCTCCCAGTGAGGTGCAGCTCTTGCAGGCCTCGAAGGGAATAAACCCAAACTGGGATCTCTGCAGCTTGGGTGAAGGTTAGATGCAAAGTCTCCAGATGTTCTTGAAGGTGCTGCAGTGCAGCCGGCTCCACTAATGCAGTGCAGTGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24159 lncRNA upstream 63 2142227 ~ 2143806 (+) True G16241
TU24156 lncRNA upstream 65019 2075160 ~ 2078850 (+) True G16238
TU24120 lncRNA upstream 74154 2063565 ~ 2069715 (+) True G16219
TU24140 lncRNA upstream 87869 2050185 ~ 2056000 (+) True G16226
TU24161 lncRNA upstream 97485 2043651 ~ 2046384 (+) True G16243
TU24164 lncRNA downstream 41601 2192086 ~ 2243135 (+) True G16246
TU24158 lncRNA downstream 91801 2242286 ~ 2302128 (+) True G16240
TU24157 lncRNA downstream 92872 2243357 ~ 2244932 (+) True G16239
TU24227 lncRNA downstream 103344 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA downstream 103350 2253835 ~ 2254471 (+) False LOC122341670
XM_043235918.1 mRNA upstream 3048 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 133438 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 202076 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 273259 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 413872 1728370 ~ 1729997 (+) True LOC122332958
XM_043230556.1 mRNA downstream 9861 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 111125 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 117103 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 142818 2293303 ~ 2296045 (+) True LOC122333376
XM_043235022.1 mRNA downstream 173215 2323700 ~ 2340093 (+) True LOC122341568
TU24133 other upstream 29530 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 80085 2056681 ~ 2063784 (+) False G16222
TU24131 other upstream 80085 2056681 ~ 2063784 (+) True G16222
TU24132 other upstream 80085 2058677 ~ 2063784 (+) False G16222
unassigned_transcript_275 other upstream 278084 1865713 ~ 1865785 (+) True trnar-ccu_2
TU24191 other downstream 10360 2160845 ~ 2165614 (+) False LOC122333054
XR_006250539.1 other downstream 414402 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 417599 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 490727 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 490727 2641212 ~ 2646750 (+) False sumo2b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006394 True 462 mRNA 0.60 3 CM030134.1 3825568 ~ 3826749 (+)