RNA id: TU24127


Basic Information

Item Value
RNA id TU24127
length 1330
lncRNA type read_through
GC content 0.45
exon number 3
gene id G16222
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2024348 ~ 2320138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCTAAGAGGTGAAAAGTGATTTTCTCAGGTtttcagttgaaaaaaaaaagaaaaaaaaaatgaagctcaTACATTTGCTAAAGGGGTTTtgaaaaagccatttttattgcataattatACCAACAATTTATGACAAATTTCTCCAGGTATCATTAAAGAGTTGCAGAGACAGAACAAAACATCACAAGGTCATtactgagagagagagagagatgctctATCTATCCATACACAATCAATCGTAGTAAATTTCTCTCACTTCCCAGCAGTGTGAGCGAAAAGAAGCAGAAACTGAGCACGAGCTTGGAGGAAGGAGATCGATCGCCGCGTGATGGGATGTGATGTCAGAGTGTTACACGTGATCAGAGGTAGCCGCGGAAGTGCTCCGAGTCggtttttttgatttaaaaaaaaaaaaactcccgcCAAACGTCCGACTCCCGCTTGCGCCCTGAACGTCGACGGAGACGCATTTACCGGAAGATAAAGAGGAACACGTCCAAAGAGTAGATTTAAGGCGATAGTGCATGTCTAAATGAGCTCGTGCGTTTCCTACGCCATCCTTCAATCCGCTTCAGCGGCGCCAAAAACGCTGTTttactgctcaaaaaaaaattcccccCCAAGTCATGTGCATGAAAATCGCTAATATTATCGGCGCTGGTTCGATTTGCTAAATGCCTCATTGGTGTGTAAAGCCCAAAAGCGTAACTGTAAGATATCGACACAATCGTTTATTTGCCAGCAGAGAGCGCTACGTTCATCCTTATACCATTATAAAACGTACGAATAAAATACGGTTTTCGCAGAAAGCAATTTCGCTTTGGTCCCCTTCAGATAagttctcttcttcttcttcgccatttttttttttaatttttattttttatctttttacttCGGTTAGAAAAATAGATGCGGACTCGGGAGCGCGGTCGACGGAGCGCGTCCTTACAAAAATATCGTTGCGTCGTTTTTCTATTCTAGAGGAATGACAGGAAAACGGGAGTTTGGTCCTCAGTGGGCGACGCTGTCAGGTGTGTGATTGTCAGGAGAACCGTTGAGTGAGGATacaagaagaacaaaaacaaagtatCTCTGAGTTTTCGTGGACGTTGTGGTCCGAGACTGTTgtgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagggacGCTGCGGTCCGTCTTCTTTCACTCAGGTTTGGGTTCGGGGGTCTCGGTCTTGGCCTCCGGGTCTTCGTCGCTCTCGATTCCCGAGCGGCTCACGATGCGGCGCATGGTGAAGGGCAGATCTCCGCGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23819 lncRNA upstream 35079 1776986 ~ 1989269 (+) True G16028
TU23818 lncRNA upstream 44639 1770757 ~ 1979709 (+) True G16027
XR_006248070.1 lncRNA upstream 80619 1942689 ~ 1943729 (+) True LOC122330717
TU23808 lncRNA upstream 133321 1871280 ~ 1891027 (+) False G16017
TU23807 lncRNA upstream 150828 1871280 ~ 1873520 (+) True G16017
TU24270 lncRNA downstream 106270 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 106270 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 196374 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 244350 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 281700 2601838 ~ 2602340 (+) False G16358
XM_043226579.1 mRNA upstream 13917 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 82555 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 153738 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 294351 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 296655 1711295 ~ 1727693 (+) True LOC122329718
XM_043235022.1 mRNA downstream 3562 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 21393 2341531 ~ 2349689 (+) True LOC122341598
XM_043235031.1 mRNA downstream 29637 2349775 ~ 2691512 (+) True LOC122341572
XM_043235020.1 mRNA downstream 37548 2357686 ~ 2370636 (+) True LOC122341566
XM_043235048.1 mRNA downstream 101933 2422071 ~ 2423550 (+) True junbb
unassigned_transcript_275 other upstream 158563 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 373620 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 377816 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 377920 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 400954 1620931 ~ 1623394 (+) True trnar-ccu
XR_006250539.1 other downstream 244749 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 247946 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 321074 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 321074 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 962852 3282990 ~ 3283656 (+) True G16530

Expression Profile