RNA id: TU24131


Basic Information

Item Value
RNA id TU24131
length 2986
RNA type TUCP
GC content 0.43
exon number 4
gene id G16222
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2024348 ~ 2320138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGCAgtgaatgtttaaattaaattgaaattgaacGTTTAGGAAAGAAATGCTGGTAGGAACCACGGATATCATAGTTTCCTCTTACAATCGTGATCTTTTACTCTTGTTTTAACCcaactaatgaaaaaaaaaagaaaaaaaaatgaagctcaTACATTTGCTAAAGGGGTTTtgaaaaagccatttttattgcataattatACCAACAATTTATGACAAATTTCTCCAGGTATCATTAAAGAGTTGCAGAGACAGAACAAAACATCACAAGGTCATtactgagagacagagagagagagagagagagagagagatgctctATCTATCCATACACAATCAATCGTAGTAAATTTCTCTCACTTCCCAGCAGTGTGAGCGAAAAGAAGCAGAAACTGAGCACGAGCTTGGAGGAAGGAGATCGATCGCCGCGTGATGGGATGTGATGTCAGAGTGTTACACGTGATCAGAGGTAGCCGCGGAAGTGCTCCGAGTCggtttttttgatttaaaaaaaaaaaaactcccgcCAAACGTCCGACTCCCGCTTGCGCCCTGAACGTCGACGGAGACGCATTTACCGGAAGATAAAGAGGAACACGTCCAAAGAGTAGATTTAAGGCGATAGTGCATGTCTAAATGAGCTCGTGCGTTTCCTACGCCATCCTTCAATCCGCTTCAGCGGCGCCAAAAACGCTGTTttactgctcaaaaaaaaattcccccCCAAGTCATGTGCATGAAAATCGCTAATATTATCGGCGCTGGTTCGATTTGCTAAATGCCTCATTGGTGTGTAAAGCCCAAAAGCGTAACTGTAAGATATCGACACAATCGTTTATTTGCCAGCAGAGAGCGCTACGTTCATCCTTATACCATTATAAAACGTACGAATAAAATACGGTTTTCGCAGAAAGCAATTTCGCTTTGGTCCCCTTCAGATAagttctcttcttcttcttcgccatttttttttttaatttttattttttatctttttacttCGGTTAGAAAAATAGATGCGGACTCGGGAGCGCGGTCGACGGAGCGCGTCCTTACAAAAATATCGTTGCGTCGTTTTTCTATTCTAGAGGAATGACAGGAAAACGGGAGTTTGGTCCTCAGTGGGCGACGCTGTCAGGTGTGTGATTGTCAGGAGAACCGTTGAGTGAGGATacaagaagaacaaaaacaaagtatCTCTGAGTTTTCGTGGACGTTGTGGTCCGAGACTGTTgtgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaagggACGCTGCGGTCCGTCTTCTTTCACTCAGGTTTGGGTTCGGGGGTCTCGGTCTTGGCCTCCGGGTCTTCGTCGCTCTCGATTCCCGAGCGGCTCACGATGCGGCGCATGGTGAAGGGCAGATCTCCGCGTCTGGACACAAGAGACACGCAACGAAACAACTTAGAAGACGATACCGCCGTAGAAGAACAGAACGAATTGATGTGAACGCCGCGGTGGATGCGCTGACCTGAGTTTGCTCTTCAGGCTGTTGACCTCTCGGTTCATGGCGTCGGCGGACTCGGTGGCGTCCTCTAGCTCGCGCTGGAGCTTCCTGCGGTTGGCGTTGGCTCTCTGCGCCTCCTCCTCGGCCTCCTCCAGCTGCCGCTTCAGCTGCTTCATGCGGCTGTTCAGCTTCTCGGACTGTAGAGACGGCACACGAGTGTTAGCAGGGCGGCCCGCGGCGGGGACTTACTGGGCGTGCGGCGGGCCTCACCTGGTCTTTAAACTGCTCCGTGTTGCGTCTCTCGTCGTCCACCTGCAGAATCACCTCCTTCAGCTTCTTCTCCGTACGACGCACCAGTTTGGAGGcctgctgtctctctctgaaCACAAACAGCACTCATGAGCTTCGGCTCTTCACCTTGCCTCAAAAAAAACTATGTCTTAACAGctgaagaaaagaaacacaCGAACGGCCTGAATTTCACTAttttagctttgaaaaaaaaaaaaaaaaaaaaatgtagttttcatttttataaataacgCATTTGAGGCAAAATAACGTATTTGATTCAATAttagtggggtttttttattttattttagtgatatgTTTATTATcgttttcttgtttattttttctattagtGGCAGctcagtagttttttttttttatattaaactacaaaaaaatatatattttttttttaaacagtccatgtagtttttaattaatttcttaaactAAATAACAGCTGAAGGAAAAAGACACGAACGCCCTGAAGGACCGTTTTTGTCCCAGAAGTAAACGAGTCCTGCTTTAAGCATTATTGGATCTTTTCTGAGTACTAAGAGGCAGTACTTGGTCTCGACGTCGAGCTGCTCCTCCAGCTGGCCGATCTTGGCCTCCAGGGCGGCGATGGTGGCCTTGTACTTGCTCTTGACGGTGCCCTCCAGCTCGGTGAGCTTCAGCTTCAGCTCCTTGTTCTGGCGCTCCATCTGAGAGCGGGCTCCCTCCAGCCGCTGGGAGGTGCTGCGCTCCGCCGTCAGCTCCACGTTGATCTGGTCCGTCTGAGGAGGAAGGGGACAGGCGGTCAGCGGTGAGAGCGAGCGGGCGGCCGGACGGACgcctcagagagagagagacacgcaCCTGCAGCAGGGCCCTCTTGAGTCGGTCGTTCACCAGCTCTGTGTTGTtctgctcctcctccagctcctcctccagCTGAGAGATCCTCGCCTCCAGACGCCTCCGCTCCTCTGAGCCCAGAGCGCtgataacacacacagagagacacacacacacacacacacagagagacacacacacacacacacacagacagagagacacacacacacagagacacagacacacaaagagacacacacacagacacacacagagacacagacacacacacacacacacacacacacacacacacactctctctctcacacactctctctcacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24140 lncRNA upstream 681 2050185 ~ 2056000 (+) True G16226
TU24161 lncRNA upstream 10297 2043651 ~ 2046384 (+) True G16243
TU24151 lncRNA upstream 25838 2028394 ~ 2030843 (+) True G16233
XR_006248070.1 lncRNA upstream 112952 1942689 ~ 1943729 (+) True LOC122330717
TU23808 lncRNA upstream 165654 1871280 ~ 1891027 (+) False G16017
TU24156 lncRNA downstream 11376 2075160 ~ 2078850 (+) True G16238
TU24159 lncRNA downstream 78443 2142227 ~ 2143806 (+) True G16241
TU24111 lncRNA downstream 80085 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA downstream 80085 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA downstream 80085 2143869 ~ 2150485 (+) False G16218
XM_043226579.1 mRNA upstream 46250 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 114888 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 186071 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 326684 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 328988 1711295 ~ 1727693 (+) True LOC122329718
XM_043235918.1 mRNA downstream 67434 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 96562 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 197826 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 203804 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 229519 2293303 ~ 2296045 (+) True LOC122333376
unassigned_transcript_275 other upstream 190896 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 405953 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 410149 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 410253 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 433287 1620931 ~ 1623394 (+) True trnar-ccu
TU24133 other downstream 48253 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 97061 2160845 ~ 2165614 (+) False LOC122333054
XR_006250539.1 other downstream 501103 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 504300 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 577428 2641212 ~ 2646750 (+) False sumo2b

Expression Profile