RNA id: TU24133


Basic Information

Item Value
RNA id TU24133
length 478
RNA type TUCP
GC content 0.64
exon number 2
gene id G16223
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2112037 ~ 2114339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTATCTTCACCAGACGCTCATAACGGTTCTCGTGTTCTGTGGTCTCGGCAGGCGTGTTTTCCGTGGTTCTAGCGGACAGCCGTACCCCGTACTCGATGGCGAGGTCCGTGTGTTCGTCGATGTCGACTTTGGCCATGGTCACGCGGCCCTTCTGCTTGGCGATGGCCTTCTCCAGCCGCGGGCCGAGGATCTTACACGGACCACACCACCTTTGCGCGTGGAAGTCGACGAGGACGGGCAGCTGGCTGTTGATGACTCGGTCGGTGAAGTCGTCGTGGTCCTGCACGTTGAAGGACACGCTCCTGCGGGAGGACAGCGGGAGGAGGCGCGGGAGCGGGAGCAGCGCCGGAGACGGGCTCAGAGCCGAGGAGAAGGACGAGGAGCACCAGACGGCGGCCGGCGGACGCCTCGCATCCCTGACGGAAAGCCCACAAACCCTCCGAGCCAGCAGCCTGAACGCCATCTACACCACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24156 lncRNA upstream 33187 2075160 ~ 2078850 (+) True G16238
TU24120 lncRNA upstream 42322 2063565 ~ 2069715 (+) True G16219
TU24140 lncRNA upstream 56037 2050185 ~ 2056000 (+) True G16226
TU24161 lncRNA upstream 65653 2043651 ~ 2046384 (+) True G16243
TU24151 lncRNA upstream 81194 2028394 ~ 2030843 (+) True G16233
TU24159 lncRNA downstream 27888 2142227 ~ 2143806 (+) True G16241
TU24111 lncRNA downstream 29530 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA downstream 29530 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA downstream 29530 2143869 ~ 2150485 (+) False G16218
TU24164 lncRNA downstream 77747 2192086 ~ 2243135 (+) True G16246
XM_043226579.1 mRNA upstream 101606 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 170244 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 241427 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 382040 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 384344 1711295 ~ 1727693 (+) True LOC122329718
XM_043235918.1 mRNA downstream 16879 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 46007 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 147271 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 153249 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 178964 2293303 ~ 2296045 (+) True LOC122333376
TU24128 other upstream 48253 2056681 ~ 2063784 (+) False G16222
TU24131 other upstream 48253 2056681 ~ 2063784 (+) True G16222
TU24132 other upstream 48253 2058677 ~ 2063784 (+) False G16222
unassigned_transcript_275 other upstream 246252 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 461309 1650656 ~ 1650728 (+) True trnar-ccu_1
TU24191 other downstream 46506 2160845 ~ 2165614 (+) False LOC122333054
XR_006250539.1 other downstream 450548 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 453745 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 526873 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 526873 2641212 ~ 2646750 (+) False sumo2b

Expression Profile