RNA id: TU24157


Basic Information

Item Value
RNA id TU24157
length 1462
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G16239
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2243357 ~ 2244932 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacactcgctcgaGTGCAGAAACATCTCAAACAAAGCATCGACtggaaagaaacaaaagcacGACCAAAAGCACTTATATCCTAGCGCACACCTGAAACGTAAAGAGTATGTAATATATAGACAGAAAACCGTGTTAAAAACAATCTCTAAAAAttagaaaaagcatttaaaaaaaaatcataaaactcACAGCTTCgatggaataaaaataatttaaaaaaaaagtaaaaaatgtgcaggtcacgtttaaaaaaagattaaataataataattaaaaaataatattaattaatttacaattttgtaaaaaataataacacaaagcaaaataaggattttttttttttttaagcaaaaacattttttagctttcattctgtttttttttaccaaagcaCCCGCCATATAACGTTCGGAAAGTGTGTTTTCACGTGTGCTGCAGCTCACTAAACTCATTTCgacctaaaataaaatgcaaaacattgcAATGGTCTTAAAGCAGCTTTTCTGTCTTgaagcaaaatgtaatttggCTAACACTTTTGTTAACATCAGCTAATAGCTCATAGTGCACTACCTAAAGTTAACGCTCATTTTAATAATACGGAAATAAACTTTAACTAACGAATGCTGTAGGAGTATTATTCAACTAATGTGGTTAATTAATGAAAGCGTTTCCGTAACTTCCTATCGTTTGCTTTCAGTTTTAGGGTGAAATGTGAGATTGAGCTGAAGTAGTATTGTTACTTTGTGTGCTGTGGCTCCTCCACGCCTCTAGAGGGCTCGCTTCAGCTGGGCTTCGTCACAAAAGCAGATGCTAAAAACCGTCAAGCGCCTTCCGCTCATTAATTCTAACGCACTTAAAAGCTGCACgctgtaaacaaacacagaagagcGTGTTCCCTTTCTCTGCCGAGCGCCGGAGTAATGGAGTGTTACCCAGAATGCCCTTCACAAGCACAGTCTGTCTAGTTGAAGCAGCAGAAGAGCGAGCACGTGGACGGCTCTGGGCTGCGGAAGTTTCCGGAGGTCGGCGTGTCGGTGCATTCGGCGATGAACCGGTGCAGTTCAGACACCTGCGGCACGTCCTGGGTTTGTTGCTGAGcgtgaaaaacacacacacacacacacacacacacacacacacacacacacacacagaaaacccATCAAAAACAGCAACATTTACATGCCTGTCAGGCCATTTTAAACTGGTCTGTTTTAGGTACGCTTGCCGTCTCGAAAAGAAGCACACGGAAGCACGTTTCcaacacagaataaaaatgaaattgtgaCTTTATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24164 lncRNA upstream 222 2192086 ~ 2243135 (+) True G16246
TU24111 lncRNA upstream 92872 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA upstream 92872 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA upstream 92872 2143869 ~ 2150485 (+) False G16218
TU24159 lncRNA upstream 99551 2142227 ~ 2143806 (+) True G16241
TU24227 lncRNA downstream 8897 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA downstream 8903 2253835 ~ 2254471 (+) False LOC122341670
TU24239 lncRNA downstream 51935 2296867 ~ 2355930 (+) False G16310
TU24241 lncRNA downstream 51935 2296867 ~ 2356071 (+) True G16310
TU24142 lncRNA downstream 69368 2314300 ~ 2374078 (+) True G16227
XM_043230556.1 mRNA upstream 77664 2160346 ~ 2165693 (+) True LOC122333054
XM_043235918.1 mRNA upstream 102536 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 232926 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 301564 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 372747 1867624 ~ 1870610 (+) True LOC122330213
XM_043235185.1 mRNA downstream 16678 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 22656 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 48371 2293303 ~ 2296045 (+) True LOC122333376
XM_043235022.1 mRNA downstream 78768 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 96599 2341531 ~ 2349689 (+) True LOC122341598
TU24191 other upstream 77743 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 129018 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 179573 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 319955 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 323152 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 396280 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 396280 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 1038058 3282990 ~ 3283656 (+) True G16530

Expression Profile