RNA id: TU24158


Basic Information

Item Value
RNA id TU24158
length 639
lncRNA type read_through
GC content 0.41
exon number 3
gene id G16240
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2242286 ~ 2302128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGCTCAAATATCTGTatttatgatgataataaaGAGCGTTCATgtcacacacaaatacacattcaGAATAATCtctccaaataaataaacaacttaaAAGTGCAAATCtgtgtattgtaaaaaaaaaatattccccttgttaaaaaatgaatgcCACTAACGACAAACATACACCAAATGCCTCTCATCTTACAGTtagacacaataaataaaaaacgttAAAATGAAACAGTATTTCAGGTCGTCTGAATCGACATTAAAACAGTGAACTCAACGCATGGCATCAAACTCCACCAAAAAGGCATTCTGGGTAAGAAACAGTAATTACGTGAAAGCAAAGCTGCCGTCCACCTCACCGCGAAAAGACACATCTAATCAGATTCTCTCAGGCCTGAACGATGTTAAACTGCCCCGAGCTGAAAGTCCACGGCTAACGTAGAGCTCGTGAATAACACGGAGATCAGCAAGACGCTCCTTCAGTCCTCGCTCCCTCATCTTTAGGCTTTCAGTAATTAAAGGAGCTATCGACCAAAACAGAAAGACCGCAGAAAACACCCCCAGCCCCTCGAGGAGCTCTCGACAAGCTCCAGGCCTCTCAaacatcgacgtgtgtgtgtgtgtgtgtgtgtgtgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24111 lncRNA upstream 91801 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA upstream 91801 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA upstream 91801 2143869 ~ 2150485 (+) False G16218
TU24159 lncRNA upstream 98480 2142227 ~ 2143806 (+) True G16241
TU24156 lncRNA upstream 163436 2075160 ~ 2078850 (+) True G16238
TU24142 lncRNA downstream 12172 2314300 ~ 2374078 (+) True G16227
TU24270 lncRNA downstream 124280 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 124280 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 214384 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 262360 2564488 ~ 2565843 (+) True G16344
XM_043230556.1 mRNA upstream 76593 2160346 ~ 2165693 (+) True LOC122333054
XM_043235918.1 mRNA upstream 101465 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 231855 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 300493 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 371676 1867624 ~ 1870610 (+) True LOC122330213
XM_043235022.1 mRNA downstream 21572 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 39403 2341531 ~ 2349689 (+) True LOC122341598
XM_043235031.1 mRNA downstream 47647 2349775 ~ 2691512 (+) True LOC122341572
XM_043235020.1 mRNA downstream 55558 2357686 ~ 2370636 (+) True LOC122341566
XM_043235048.1 mRNA downstream 119943 2422071 ~ 2423550 (+) True junbb
TU24191 other upstream 76672 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 127947 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 178502 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 262759 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 265956 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 339084 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 339084 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 980862 3282990 ~ 3283656 (+) True G16530

Expression Profile