RNA id: TU24161


Basic Information

Item Value
RNA id TU24161
length 413
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G16243
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2043651 ~ 2046384 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaagtataaagtcacgctctgcgaagCCCGCGCCAGCCttctgctgttcaTGCAGGAGTCACACTGAACATCTCCAGATCCTGTGTGATGAACTGCAGGAGCAGCAGGAACAGGACCAGATTGGAGTCTCATCGTCTTCAGCTTCTCCACCATCTCAGCAAACACCACGTTTTTACCTAAAACTGGTCTTGGTGTGAAGGTTTTTCTGCACTGAGGACAGCTGTAGAGTGTCTTCCAATCCTCCTGATCCCAGCAGTCTGTGATGCATCTCATACAGTAACTGTGTCCGCAGGGAATCGTCACTGGATCCTTCAGCAGATCCAGACACACTGGACACGTGAACTGATCCTCAGCCCATGAGATCCTGGCTTCTACCATTTTCACTGTATATCAACACAGACCGAGAGATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24151 lncRNA upstream 12808 2028394 ~ 2030843 (+) True G16233
TU23819 lncRNA upstream 54382 1776986 ~ 1989269 (+) True G16028
TU23818 lncRNA upstream 63942 1770757 ~ 1979709 (+) True G16027
XR_006248070.1 lncRNA upstream 99922 1942689 ~ 1943729 (+) True LOC122330717
TU23808 lncRNA upstream 152624 1871280 ~ 1891027 (+) False G16017
TU24140 lncRNA downstream 3801 2050185 ~ 2056000 (+) True G16226
TU24129 lncRNA downstream 10297 2056681 ~ 2320138 (+) False G16222
TU24120 lncRNA downstream 17181 2063565 ~ 2069715 (+) True G16219
TU24156 lncRNA downstream 28776 2075160 ~ 2078850 (+) True G16238
TU24159 lncRNA downstream 95843 2142227 ~ 2143806 (+) True G16241
XM_043226579.1 mRNA upstream 33220 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 101858 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 173041 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 313654 1728370 ~ 1729997 (+) True LOC122332958
XM_043226184.1 mRNA upstream 315958 1711295 ~ 1727693 (+) True LOC122329718
XM_043235918.1 mRNA downstream 84834 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043230556.1 mRNA downstream 113962 2160346 ~ 2165693 (+) True LOC122333054
XM_043235185.1 mRNA downstream 215226 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 221204 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 246919 2293303 ~ 2296045 (+) True LOC122333376
unassigned_transcript_275 other upstream 177866 1865713 ~ 1865785 (+) True trnar-ccu_2
unassigned_transcript_274 other upstream 392923 1650656 ~ 1650728 (+) True trnar-ccu_1
TU23775 other upstream 397119 1644778 ~ 1646532 (+) False G16003
TU23777 other upstream 397223 1644778 ~ 1646428 (+) False G16003
TU23799 other upstream 420257 1620931 ~ 1623394 (+) True trnar-ccu
TU24128 other downstream 10297 2056681 ~ 2063784 (+) False G16222
TU24131 other downstream 10297 2056681 ~ 2063784 (+) True G16222
TU24132 other downstream 12293 2058677 ~ 2063784 (+) False G16222
TU24133 other downstream 65653 2112037 ~ 2114339 (+) True G16223
TU24191 other downstream 114461 2160845 ~ 2165614 (+) False LOC122333054

Expression Profile