RNA id: XM_043230556.1


Basic Information

Item Value
RNA id XM_043230556.1
length 1504
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC122333054
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2160346 ~ 2165693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATGAAAGAAACTCAtgcgggtttggaacaactcgCATAAAAATCAGTTCATTTCGACGAATGTCTTCAATCATTCATCTCCGAGAAAGAACGATGTAATTATTGCATTGTTGAGGTTGAGATCACTTACTTAACCTACACGTTTCCTCCAGACTTTGATATCTGAAGATTTCAAACATCTCAAAGGTTCTGAATGCCAACGTTTGAGAATGTTCTTAAAAGATGAGCTTCAGTAGAACAATGTTTGATTCTAACTTTGAGATGGCCTCGCCAGAATATTCAAAAGACATTTCCTGTTAGCTGCTGGTGACTCATTTATTGCTCCCGATGAACTGTGGGAGAAACGTTCGATGCTTCGAAACGCGATTCACATACATCTTGAGAATTCGAGAGATTTATTTATGCGCTTTGGACTGAAAGTGGCGCCGGTTGGCACACGGACGGCGGTGATGCCCGAAGGAGCAGATTTACCAGCCGTCCTGATTCGAGTCTGGTGAGGACACATCAGAAAACTCTCGAACTTCCTGTAGCAGCTTTAGAACTGGATCGCAACTCTCACAACCAGACGCATCTGCATCGCCCGCCGCCGGACCTCCGAGGATCGTAACCCGACCTCGTCTGTCGTGGCTTCAGTCCTCCGCTTCTGAAATGCCACGATCTTTTCTAGTGAAAAGCAAGAGGGCGGGGCATCACTCCACACGCTCCGCCCACTCTCAGCACGGACGTCATGACGGACGGGCGTCCAGCTGTCACTCCACGGCTCTGGAGCTGCTGCCCGGCTCATCCACCGACAGCAGTCGAGCCCAGAACAGCCCCGAGGGAGCCGGAGGTGAACCTCGACCCTGGCCCTCATCCACTGCAGGCGAGCAGTCTGGAGGTTGTCCGTTTTCTACCCTGTCCTGCTCTGCTGCGGTGGAGAGACAGAGCGAGCTGGAGCGACTGATTCAGGCTTTACTCAGCCACCATCAGCTGAGCAACGTCCAGACGCCGCTGTGTGGATGTCCACTCTGTGAGAAGCTCCTGTCCTCTGCTGTGGGTTTGACATCGCACTTGTGCAAGTCACATGTCAACAGGGCTGCTCTCCCATTGGCCGGATCCTCGGGCCACGCCCAACAGCCTTATGGGTACAAAAATACAGGAGTACTCAGGGAGCGGAGCTTTGTCTGTAAGGTTTGTGGGAAGGTGTTTAAGAGGTCGTCGACTCTCTCCACACACCTGCTCATTCACTCGGACACGCGGCCGTTCCCGTGTCCCTACTGCGGAAAGAGATTCCACCAGAAGTCTGATATGAAGAAACATACGTTCATACACACAGGTGAGAAGCCTCATGTGTGCGTGGTGTGTGGTAAAGCGTTCAGTCAGAGCTCCAATCTGATCACTCACAGCAGAAAGCACAGCAGCTACCAGCCGTTCAGCTGCTCGCACTGTCCCCTCAGCTTCCAGAGGAGACTGGACCTGCAGCGCCACCTACAGAGCCACAGCGGACTCTACCACGGGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24111 lncRNA upstream 9861 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA upstream 9861 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA upstream 9861 2143869 ~ 2150485 (+) False G16218
TU24159 lncRNA upstream 16540 2142227 ~ 2143806 (+) True G16241
TU24156 lncRNA upstream 81496 2075160 ~ 2078850 (+) True G16238
TU24164 lncRNA downstream 26393 2192086 ~ 2243135 (+) True G16246
TU24158 lncRNA downstream 76593 2242286 ~ 2302128 (+) True G16240
TU24157 lncRNA downstream 77664 2243357 ~ 2244932 (+) True G16239
TU24227 lncRNA downstream 88136 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA downstream 88142 2253835 ~ 2254471 (+) False LOC122341670
XM_043235918.1 mRNA upstream 19525 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 149915 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 218553 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 289736 1867624 ~ 1870610 (+) True LOC122330213
XM_043230436.1 mRNA upstream 430349 1728370 ~ 1729997 (+) True LOC122332958
XM_043235185.1 mRNA downstream 95917 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 101895 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 127610 2293303 ~ 2296045 (+) True LOC122333376
XM_043235022.1 mRNA downstream 158007 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 175838 2341531 ~ 2349689 (+) True LOC122341598
TU24133 other upstream 46007 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 96562 2056681 ~ 2063784 (+) False G16222
TU24131 other upstream 96562 2056681 ~ 2063784 (+) True G16222
TU24132 other upstream 96562 2058677 ~ 2063784 (+) False G16222
unassigned_transcript_275 other upstream 294561 1865713 ~ 1865785 (+) True trnar-ccu_2
XR_006250539.1 other downstream 399194 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 402391 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 475519 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 475519 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 1117297 3282990 ~ 3283656 (+) True G16530

Expression Profile