RNA id: TU24227


Basic Information

Item Value
RNA id TU24227
length 753
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC122341670
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2253829 ~ 2254655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCTCCGACCGACGTACGCCACGCAGAAGGTCGGCTCGAGCGCGCGCGGCGGTGGAGCGTCTCAAAGAAATTAATTGAAGGTATCccgatttttttgtattacttttctCAGTCATAACATTGTCTGCCGTGTAAATCTACCGTAAGATCCTGAAACGGAGCGGAGTTAGAGAAACGTTTGTTCTCGCGCGACAGGAGCACGTGGCGAGGGCGCGCGCGCGAGAATAATACAGCGTGCTTCTGACGAAATCCTGGTGCTTTAGGAAACCTGTGGATCGTAACTGGCTGGTTCTGGCCGTGCACACAACTAGAGCCCCGCGCTGCTCGTCGTGTAATGCGGGGTGTAGGATGTGTGCTACAGTACAGCAGGATCTCTGCCTTCCGCTCTCCGTCTCCTGAGAGCAGACACGCTTTATGATCCTGCTACAGCTTCATTCGAGCTGCTGCTGTTGGGTGTtaaGACGAAGCGGAAGTTCTGGAGAGCACGTGAAGAGATCATTTCGACGGAGCACATGCCAGCAGATAAAGAGCAACAAAACGCTTGCAAATAAAGTCTTCACTCAGTTTACCAATGTTtcgttttgtctttattttgtttgatcTGAGATTTGAATGCATTGCACTAAagagttttaatgtttaacttCAATGCATTTGTTAGAATTTAACctgaagtttattttatttttttgacccGTTTTAACACGTGATCAGAAGCTCCATTCATcaaatggatgaaagaaagcTTGAGT

Function

GO: NA

KEGG:

id description
ko05200 Pathways in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24157 lncRNA upstream 8897 2243357 ~ 2244932 (+) True G16239
TU24164 lncRNA upstream 10694 2192086 ~ 2243135 (+) True G16246
TU24111 lncRNA upstream 103344 2143869 ~ 2150485 (+) True G16218
TU24112 lncRNA upstream 103344 2143869 ~ 2150485 (+) False G16218
TU24113 lncRNA upstream 103344 2143869 ~ 2150485 (+) False G16218
TU24239 lncRNA downstream 42212 2296867 ~ 2355930 (+) False G16310
TU24241 lncRNA downstream 42212 2296867 ~ 2356071 (+) True G16310
TU24142 lncRNA downstream 59645 2314300 ~ 2374078 (+) True G16227
TU24270 lncRNA downstream 171753 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 171753 2426408 ~ 2434512 (+) False G16327
XM_043230556.1 mRNA upstream 88136 2160346 ~ 2165693 (+) True LOC122333054
XM_043235918.1 mRNA upstream 113008 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043226579.1 mRNA upstream 243398 2002679 ~ 2010431 (+) True rangap1a
XM_043230813.1 mRNA upstream 312036 1925747 ~ 1941793 (+) True LOC122333258
XM_043227073.1 mRNA upstream 383219 1867624 ~ 1870610 (+) True LOC122330213
XM_043235185.1 mRNA downstream 6955 2261610 ~ 2267508 (+) True LOC122341668
XM_043235186.1 mRNA downstream 12933 2267588 ~ 2270464 (+) True LOC122341669
XM_043230952.1 mRNA downstream 38648 2293303 ~ 2296045 (+) True LOC122333376
XM_043235022.1 mRNA downstream 69045 2323700 ~ 2340093 (+) True LOC122341568
XM_043235064.1 mRNA downstream 86876 2341531 ~ 2349689 (+) True LOC122341598
TU24191 other upstream 88215 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 139490 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 190045 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 310232 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 313429 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 386557 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 386557 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 1028335 3282990 ~ 3283656 (+) True G16530

Expression Profile