RNA id: XM_043235063.1


Basic Information

Item Value
RNA id XM_043235063.1
length 1222
RNA type mRNA
GC content 0.48
exon number 4
gene id sumo2b
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2641146 ~ 2646756 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGAGCGCGGTCAACGGACGCGCCGCTCGGGGTCGCGCACGCCGCGCCTGTTTTTAATCGGGGGCGCGGACGTGCGCGTCCCCGCGGAGTCTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGGGTGAAGACGGAGAACAACGACCACATCAATCTGAAGGTGGCGGGACAGGACGGGTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCCCTCAGCAAGCTTATGAAGGCCTACTGTGAGAGACAGGGACTGACGATGAGGCAGATTCGGTTCCGGTTTGACGGACAGCCCATTAACGAAACAGACACGCCCGCACAGTTGGAAATGGAGGATGAAGACACAATCGACGTTTTCCAGCAACAGACAGGAGGACACATCTGAATCAGACGACTCTAGCGACCCCCGGCccgtctctctctatctctctctctctatctatctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctatctctctatgtctctctatcgctctctatctatctctctctctctctctctctatctctctatgtctctctatcgctctctatctctctctctctctctctctctctctatctctctatgtctctctatcgctctctctctgttcctggTTCTCCTCATGGTCATCTGTAACTGCTGTTGTATAGTGTTTTCAGttcatcatgtttttctttcgttttgtACATAAGGGTTTCCGCTACAGTAATTATTACATTGGGATTGTTGATTGCCGTAAAATCTGCCGTGTCAAGCCCGAGTCTAGACCATCATCTCTGTACAGACCAACTAATACACGTTTCCCCTTAACAATCATTGAGGAGGAGAGCCGCGTGCGCGGGTTCAGGGTTTCGTTCCGGTCCCGGACACGAGCACGCGGGCCTTTTCTTTCGAAATCTCGTTTCAGGAAGTGCTCTGCTGCGCTTTAAGCAGACGAACCTGCAGCCGGTTCAGATTGAGTTTCTGTTTTCCATTCAGACCAATTGGttttacaactttttatttttttttgtagtggtCATGTACAGTGCGTAACTTGTGTTAAACATGTTTTGACTCGAGTACGAACGAGGGAGTTCATGTTTCAGACAAGTCAAGCATCTGTCTGTATTGTCTAATctcttgttaaaataaaatattctcttttta

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24310 lncRNA upstream 6766 2631795 ~ 2634380 (+) True G16357
TU24311 lncRNA upstream 38609 2602194 ~ 2602537 (+) True G16358
TU24312 lncRNA upstream 38806 2601838 ~ 2602340 (+) False G16358
TU24291 lncRNA upstream 75303 2564488 ~ 2565843 (+) True G16344
TU24283 lncRNA upstream 94243 2516512 ~ 2546903 (+) True G16337
TU24543 lncRNA downstream 14119 2660875 ~ 2667259 (+) True G16484
TU24552 lncRNA downstream 52524 2699280 ~ 2702201 (+) True G16492
TU24590 lncRNA downstream 629643 3276399 ~ 3276980 (+) True G16529
TU24622 lncRNA downstream 732525 3379281 ~ 3379545 (+) True G16549
TU24633 lncRNA downstream 737792 3384548 ~ 3476586 (+) True G16556
XM_043235025.1 mRNA upstream 14026 2617272 ~ 2627120 (+) True gga3b
XM_043235026.1 mRNA upstream 14026 2617272 ~ 2627120 (+) False gga3b
XM_043235018.1 mRNA upstream 25173 2609239 ~ 2615973 (+) True LOC122341564
XM_043231017.1 mRNA upstream 56168 2579542 ~ 2584978 (+) True LOC122333418
XM_043235015.1 mRNA upstream 98608 2513221 ~ 2542538 (+) True evplb
XM_043235058.1 mRNA downstream 733 2647489 ~ 2658946 (+) True jpt1b
XM_043235030.1 mRNA downstream 38854 2685610 ~ 2691262 (+) False LOC122341572
XM_043235036.1 mRNA downstream 622837 3269593 ~ 3272366 (+) True LOC122341575
XM_043231103.1 mRNA downstream 630413 3277169 ~ 3280555 (+) True LOC122333469
XM_043231127.1 mRNA downstream 754670 3401426 ~ 3407130 (+) True LOC122333486
TU24296 other upstream 72147 2568084 ~ 2568999 (+) True G16347
XR_006250539.1 other upstream 76191 2564887 ~ 2564955 (+) True LOC122342193
TU24191 other upstream 475532 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 526807 2112037 ~ 2114339 (+) True G16223
TU24132 other upstream 577362 2058677 ~ 2063784 (+) False G16222
TU24591 other downstream 636234 3282990 ~ 3283656 (+) True G16530
TU24613 other downstream 674064 3320820 ~ 3323054 (+) True G16541
XR_006250493.1 other downstream 863320 3510076 ~ 3525401 (+) False mmd
TU24749 other downstream 1162452 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 1300867 3947623 ~ 3985611 (+) True G16667

Expression Profile