RNA id: TU24613


Basic Information

Item Value
RNA id TU24613
length 782
RNA type TUCP
GC content 0.56
exon number 4
gene id G16541
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3320820 ~ 3323054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGTTCCAGCCGCTCCGGGTCGTCCAGTTCCTCTCGTTCCTCTAGCTCGTCCGGGTCCTCCGGCTCTCCCAGCCCGAGCCGCCGTCGCCACGACAACCGACGCCGCTCTCGATCAAAGTCCAAATCACAAAAACGGACTGATGagaaggagaggaagaggaggagcccGAGCCCCAAACCAACCAAGCTTCATCTGGGAAGACTCACCAGGAACGTAACCAAGGAACACATTCAAGAGATCTTCTCGACGTACGGCAAGATCAAGATGATTGATATGCCTCCAGACCGTTTGCACCCGAATCTGTCAAAGGGTTATGCTTATGTGGAATATGAGTCTCCAGAGGACGCCCAGAAAGCCCTCAAACACATggatggAGGTCAGATAGACGGTCAGGAAATCACAGCCACGGCCGTCCTGGCCCAGAGGATACGCCCCGGCCCGAGAAGACCGTCTCCTCCGCGCCGCATGCCTCCTCCACCTCCCATGTGGCGCCGTACGCCGCCTCGCATGAGGAGAAGGTAGGCTTTTCTAACGCATTTTAGTCCTGCCGGCACGCTATGCTTTCTGGGAACCAATCCATACAAtcctaaatttaattttacccCTCACTTGGCATCTGCCTGCGACCTGTCCTTTCCCCTCACATTCCTGTTTATTCGTCCTCGCGCAGTAGGCGGCCCTCCTTTTTATGTCTTATCAGGTAATTAGCGAGCCTGTGATTCATCTTTGCCAGAGCTGACGCTCTGTCCTTTCCGCAGGTCTCGGTCTCCACGGCGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24590 lncRNA upstream 43840 3276399 ~ 3276980 (+) True G16529
TU24552 lncRNA upstream 618619 2699280 ~ 2702201 (+) True G16492
TU24543 lncRNA upstream 653561 2660875 ~ 2667259 (+) True G16484
TU24310 lncRNA upstream 686440 2631795 ~ 2634380 (+) True G16357
TU24311 lncRNA upstream 718283 2602194 ~ 2602537 (+) True G16358
TU24622 lncRNA downstream 56227 3379281 ~ 3379545 (+) True G16549
TU24633 lncRNA downstream 61494 3384548 ~ 3476586 (+) True G16556
TU24630 lncRNA downstream 202850 3525904 ~ 3526906 (+) False mmd
TU24652 lncRNA downstream 217362 3540416 ~ 3540798 (+) True G16575
TU24655 lncRNA downstream 217903 3540957 ~ 3541640 (+) True G16576
XM_043231103.1 mRNA upstream 40265 3277169 ~ 3280555 (+) True LOC122333469
XM_043235036.1 mRNA upstream 48454 3269593 ~ 3272366 (+) True LOC122341575
XM_043235030.1 mRNA upstream 629558 2685610 ~ 2691262 (+) False LOC122341572
XM_043235058.1 mRNA upstream 661874 2647489 ~ 2658946 (+) True jpt1b
XM_043235063.1 mRNA upstream 674064 2641146 ~ 2646756 (+) True sumo2b
XM_043231127.1 mRNA downstream 78372 3401426 ~ 3407130 (+) True LOC122333486
XM_043235901.1 mRNA downstream 86723 3409777 ~ 3415087 (+) True cbx2
XM_043235951.1 mRNA downstream 163098 3486152 ~ 3490051 (+) True tmem100a
XM_043235399.1 mRNA downstream 187022 3510076 ~ 3526914 (+) False mmd
XM_043235401.1 mRNA downstream 187022 3510076 ~ 3526914 (+) False mmd
TU24591 other upstream 37164 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 674070 2641212 ~ 2646750 (+) False sumo2b
TU24319 other upstream 674070 2641212 ~ 2646750 (+) False sumo2b
TU24296 other upstream 751821 2568084 ~ 2568999 (+) True G16347
XR_006250539.1 other upstream 755865 2564887 ~ 2564955 (+) True LOC122342193
XR_006250493.1 other downstream 187022 3510076 ~ 3525401 (+) False mmd
TU24749 other downstream 486154 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 624569 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 646461 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 1033978 4357032 ~ 4359304 (+) False LOC122340527

Expression Profile