RNA id: TU24652


Basic Information

Item Value
RNA id TU24652
length 305
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G16575
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3540416 ~ 3540798 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattatgttccTTTTAATGTTTCCTGCAACaaatattgcacttttttttattaccgtGTAATGCACTATTCATCCACGGTCTTTCCTGCGAAATCTGCAGCGTCAAAAAAAACCCGGATTCAGACGCACATTCTTCCCGTTCGCCTCTAGTGGAAAACAGAGCTGAACTGATCCGAAAAGTGGCAGAGATAAAGCTTCCGACCCAGCTGCGGGCACAACACGATCCGCAAACACCTGACCGCATGGACttcaaccaaacacacacacacacacgcacgcacacacacgcacgcgcgcacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24630 lncRNA upstream 13510 3525904 ~ 3526906 (+) False mmd
TU24633 lncRNA upstream 63830 3384548 ~ 3476586 (+) True G16556
TU24622 lncRNA upstream 160871 3379281 ~ 3379545 (+) True G16549
TU24590 lncRNA upstream 263436 3276399 ~ 3276980 (+) True G16529
TU24552 lncRNA upstream 838215 2699280 ~ 2702201 (+) True G16492
TU24655 lncRNA downstream 159 3540957 ~ 3541640 (+) True G16576
TU24672 lncRNA downstream 27994 3568792 ~ 3569146 (+) True G16589
TU24687 lncRNA downstream 53879 3594677 ~ 3598203 (+) True G16598
TU24698 lncRNA downstream 65374 3606172 ~ 4061550 (+) True G16604
TU24739 lncRNA downstream 205109 3745907 ~ 3804511 (+) True G16623
XM_043235399.1 mRNA upstream 13502 3510076 ~ 3526914 (+) False mmd
XM_043235401.1 mRNA upstream 13502 3510076 ~ 3526914 (+) False mmd
XM_043235400.1 mRNA upstream 13502 3516390 ~ 3526914 (+) False mmd
XM_043235402.1 mRNA upstream 13502 3517701 ~ 3526914 (+) False mmd
XM_043235403.1 mRNA upstream 15015 3510076 ~ 3525401 (+) False mmd
XM_043229612.1 mRNA downstream 268372 3809170 ~ 3813344 (+) False LOC122332297
XM_043229621.1 mRNA downstream 268374 3809172 ~ 3813344 (+) True LOC122332297
XM_043229629.1 mRNA downstream 268374 3809172 ~ 3813344 (+) False LOC122332297
XM_043235099.1 mRNA downstream 288851 3829649 ~ 3831319 (+) True tmem220
XM_043232053.1 mRNA downstream 334528 3875326 ~ 3877867 (+) True mrps7
XR_006250493.1 other upstream 15015 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 217362 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 256760 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 893666 2641212 ~ 2646750 (+) False sumo2b
TU24749 other downstream 268410 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 406825 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 428717 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 816234 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 896490 4437288 ~ 4438201 (+) True G16955

Expression Profile