RNA id: TU24687



Basic Information


Item Value
RNA id TU24687
length 1070
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G16598
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3594677 ~ 3598203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGATTGTGCCGGTGGGCGAGGGCAGAGGGCTCATGAGGTGAGCAATGTTATCTGGGATGTTAATGGTTAAAGGGGAGATCTGTGGCTGAACTGCTTTCACTGGAGACTCCGGTTCCTGCTTCTCACGCTTGACGCTCGCCAGCGCAGTGAACGTGATCTTGATGTTCGTACTGGGGAACCGAAACGTGcacctgagaACGTGAACTGCCAGCGGTTTTGGAAGTGGATCACTGACCGTCACAGCCCCACGCGCCGTACTTACGGTTGGGatccatttatttcaaatcCAGGAAACATTGCGATGATGTACTAAATCAggattgttgtgttttttttaaagacttaaaACCCTTATGGTTTGGATGAGGAAGCTGGTGTTTTGAGTGCCACTGCGATAGATGCATTTTGCCGTATTAAGGTTAATGATTAATCCATTACTCGGTTGTCAATTTAAACGACATTTGATTATAGAAATGACCAAAAATTTGGTAACCAACATTAATTAGATTCAGGACAATTTCAACAAAACTAACGTTTTGCATATCTATTAAACCAATGGtcttatttgattaatttttttacttattttttccaAACTCCTATTTGAACTTATTAGTTAACAACAGTAGTTGTAACTTTCGTTAAACAAATTTTCTAATTAATTTCATCAAATTTGGTTTTCACAACCAAAAACCACACCGGCATTAACACTAGTTAATGTTGACTAGTTAATGCGCTGTTAAGTCCCTCTACCATTggtggttcaaccgtaacgtaatgaagctatgagaatatcTTTGTACAAAGAAAATGGTAGCATCATGTCGAAAACATTGtggcatgcatttattttagttaaagtttaagcaattaagcaatttttaagcattttttttatcgtAAAGTATAATAACCCtggtttgttcatgttagttcactaACTAAAGCTAACAGCTATTGATTTGGCATCCGTTcgttgtttatttgattaaactgttaaaaagtacctttttaaagtgtttagtTTACAATTCTAGTAAATGTCCAAATGCTTTTTTACTACTGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24672 lncRNA upstream 25531 3568792 ~ 3569146 (+) True G16589
TU24655 lncRNA upstream 53037 3540957 ~ 3541640 (+) True G16576
TU24652 lncRNA upstream 53879 3540416 ~ 3540798 (+) True G16575
TU24630 lncRNA upstream 67771 3525904 ~ 3526906 (+) False mmd
TU24633 lncRNA upstream 118091 3384548 ~ 3476586 (+) True G16556
TU24698 lncRNA downstream 7969 3606172 ~ 4061550 (+) True G16604
TU24739 lncRNA downstream 147704 3745907 ~ 3804511 (+) True G16623
TU24721 lncRNA downstream 202449 3800652 ~ 3815227 (+) False G16619
TU24730 lncRNA downstream 202449 3800652 ~ 3815227 (+) False G16619
TU24732 lncRNA downstream 202449 3800652 ~ 3815227 (+) False G16619
XM_043235400.1 mRNA upstream 67763 3516390 ~ 3526914 (+) False mmd
XM_043235402.1 mRNA upstream 67763 3517701 ~ 3526914 (+) False mmd
XM_043235407.1 mRNA upstream 69276 3510076 ~ 3525401 (+) False mmd
XM_043229612.1 mRNA downstream 210967 3809170 ~ 3813344 (+) False LOC122332297
XM_043229621.1 mRNA downstream 210969 3809172 ~ 3813344 (+) True LOC122332297
XM_043229629.1 mRNA downstream 210969 3809172 ~ 3813344 (+) False LOC122332297
XM_043235099.1 mRNA downstream 231446 3829649 ~ 3831319 (+) True tmem220
XM_043232053.1 mRNA downstream 277123 3875326 ~ 3877867 (+) True mrps7
XR_006250493.1 other upstream 69276 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 271623 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 311021 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 947927 2641212 ~ 2646750 (+) False sumo2b
TU24749 other downstream 211005 3809208 ~ 3813303 (+) False LOC122332297
TU24797 other downstream 349420 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 371312 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 758829 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 839085 4437288 ~ 4438201 (+) True G16955

Expression Profile