RNA id: TU24698


Basic Information

Item Value
RNA id TU24698
length 1124
lncRNA type read_through
GC content 0.52
exon number 2
gene id G16604
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3606172 ~ 4061550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCTGCGAATGCTGTCTAGCTAGGCGGCTCACTGGGGTTTGAGACGCGGCCCACGGCGCGCTTTGAAAgcgaaaggaaaaaaaaaaaaaacgtgcaacATAAGGACACCAGCACGTGCTCCCGGTGCGGCCGcatcacaacaacaacaacaataacagcgAAGATGAGGAGCGCGGAGAGGATGAAGGTTATAATAACTCACACTCGCGGCAGCTGCAGGGGTGGCGCCCCCCGCCGCAGGAACACCCCGTCCACGAACACCCCGTTTTTGCCCAGACAGCGCAGGTAGAACTCTCCCGAGCCCGTGTCCTCGGCGGCGGCGGTGAAGATCTCCAGGTGCCGGCGGGAGATGAAGCTCGAGTGGCCCATGCTCACGTCCACCGAGCCCTGCGACGAGTTCCGACCCACCGTCACCGAGCGCTTCTTCATCACGTACTCAAACTCGCGGCCCTCCAGGCGGGCCACCGCTGCCATCGTTATCTTTCCGCGCGCACGGAGCGGGGCACGATATATATGAATGGGGGGAAAAATATGAAGGGGTGGTGAAACGTTAAACGTGCCCGACCGGAGACACCAGCATCAGCGGCGGCGACTCGACCCACCGCCGCGATTCACCGCACAGAGAAAGGGAAGGGGGCCTTAGCCAATCAAAGCGCGCCGGCGAAGGGGGCGCTGTGATTGACAGGCACGCGGGCCAATCGGCGGCGCGCTAGGGGATGCGGTAATTCAACTGCGACCAATGAAACGAGGCCTATGGGAGACCAGACGGATTGAAGGTCGGTTGCGCTGTGCCTCAACACGCATGTGTGTGGAGAGTTGTCAACGCTGGACTGGAGATTTGTCATGGACGTGAAACGGCTTTATAATATTACGGCAATGATAAATTATCGAAGAAAAATAATGCAGTGAAAATCCGGCAAtcgcaaataaaaacaaaagcaacgcTTTACCATTTAAGACTTGCATTGCATTCGCTTTATATTCTATTCACTGGctttttctattctgttctatgcATGTAGgcataaaataactaaaaaagcaacttattttctttctttctttaaaaaaggtCTCTAAGtagctctttttttaatttatatataataataataataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24687 lncRNA upstream 7969 3594677 ~ 3598203 (+) True G16598
TU24672 lncRNA upstream 37026 3568792 ~ 3569146 (+) True G16589
TU24655 lncRNA upstream 64532 3540957 ~ 3541640 (+) True G16576
TU24652 lncRNA upstream 65374 3540416 ~ 3540798 (+) True G16575
TU24630 lncRNA upstream 79266 3525904 ~ 3526906 (+) False mmd
TU25143 lncRNA downstream 88032 4149582 ~ 4150963 (+) True G16883
TU25152 lncRNA downstream 154313 4215863 ~ 4219429 (+) True G16890
TU25167 lncRNA downstream 253581 4315131 ~ 4315467 (+) True G16897
TU25168 lncRNA downstream 255286 4316836 ~ 4317051 (+) True G16898
TU25243 lncRNA downstream 350127 4411677 ~ 4441048 (+) True G16956
XM_043235400.1 mRNA upstream 79258 3516390 ~ 3526914 (+) False mmd
XM_043235402.1 mRNA upstream 79258 3517701 ~ 3526914 (+) False mmd
XM_043235407.1 mRNA upstream 80771 3510076 ~ 3525401 (+) False mmd
XM_043234096.1 mRNA downstream 60209 4121759 ~ 4134915 (+) True cfap70
XM_043234236.1 mRNA downstream 74320 4135870 ~ 4145083 (+) True hmox2b
XM_043234242.1 mRNA downstream 74929 4136479 ~ 4145083 (+) False hmox2b
XM_043234107.1 mRNA downstream 93520 4155070 ~ 4274967 (+) True coro7
XM_043234113.1 mRNA downstream 93523 4155073 ~ 4274967 (+) False coro7
XR_006250493.1 other upstream 80771 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 283118 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 322516 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 959422 2641212 ~ 2646750 (+) False sumo2b
TU25218 other downstream 295482 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 375738 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 397148 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 409182 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 409182 4470732 ~ 4486464 (+) False G16978

Expression Profile