RNA id: XM_043229621.1


Basic Information

Item Value
RNA id XM_043229621.1
length 1684
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122332297
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3809170 ~ 3813344 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCGGACAGCGCTGTCACCTACATCCGTCTTCTCCTCGGCTATTTACTTCGCAGACTTAAATTCACTACAGTCTTCGTTCGTCTGTAGAAAGCATTCGCACGTGTTCTACTGCACAACGGACAGGGCGTCTCATTTTCACGTACTTTGTTTCCCGCCGTGGAGTAAACCAGTGCAACCTGTTTTAGGGTGAGGCGACGCTGGGGAAAGAAGGAGCGAGACGCACAAAAATACAAGCCTCGACCAGGACTGCAGCAAGGTGCTGTTCTTGGAGAGGGAGGAGGGTTGCACCGGAGATTCTCTCTGACTGTACCCTCTGTGGTCTTTTGAGGTCGGGGTCggtagctgagctgaaccagacgGCCGCAGGagtgcagaggatggattcTACAATGGCCGAGTagaaatgttgacatttttgacaAGCCGCGACGAGCTAAAAGGAGGCCGGTGTGTTCGGATCAGCCTCTGCACGTTATCCCGGTAAGGGTGTCGTTTTttcacccccatgtctctgatCCAAacatacccatctgaaccattataacggcagtctatgggatctgttgctagggtgctctaaatggttgctagggcgtggcttgacaccttcacagcgatcccgagactttgattggttagcccacccccacgtcatTTTCATGCAAAGTTATTTTGATTCGCGAAATTCTACGGATGGATTCTACGATGGCCGACATTTTTGAGGCCCGAGGAAGACTGTCCGGGATCTCAGCGGCGGACTGGACCGGATTCGGGAGAAAGTAATTAGCTCCTAATTAATTAGGTCCCAGTCTCTTTTAAGTGCAGTGTGGTCCTAGCTAGGCCCGTATTGACTGATCACAGCGACGATGGCTTCACTCAGACGCCGGCGTGGGAGCATCGATCATCCTCCTGACATGCTAGCTGATGTTATTAATCTCCAAGAAGAATTGAATAAACTTCAAAAGGACGTTTTACCAGAATGCGACAAGCATATGCAGAAAACTAGGGACCTCTTcaatgactttaaaaatgttcacaGACTTGTCACTTACGCCACGAAAGGAGCAGTACTGACTGGCTATCTCGGGGTGGTGTTAATAGCATTAGCTTTGTTGGTAgttgatgaagatgaagagttGTATGATATTTTTGCTGGAGCGGGGGCAGTTATGAGCGCCGTTGCCATGTTATGCGTTGCTTTTAGGCAATTCGGGAAAACGcagaaggggaaaaaattaaaacgaGCAATTAACGAGGAGCTCAAAGAATTTCGGGATAAATACAGCCTTGTTGTTGACGTAGTGGAAAAAATCGGTCGGTGTACAGAGAAAATACTGCGAGACGCTTTCGTAGCAGACCACAAAGCCCGGGCGTTAAGTCAACGCTTCACCTTCTCTTTTGAGAAAGGTCTCTTTCAGAAGGACGACGTGTCTAAAATTGGCCGTTTGTCTGGGAACCTTTCAGAGATGATCGCCAAGGTTGCCTCTGTGCCTGATATCCTCAAGGAGATTGTGGGAGAATCGGCACGTGGGCCTGTACGTAAGaaggaggttaaggagaaagcAGAGAAGTGTATTACTGATGTTCAGAAAGGAATCCGTCAGATTAAAAATTCAGTGAAAGACACCATCCAAACAATAGAGACAACATCAGAGCTTTTGTATTCAatctgactatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24739 lncRNA upstream 4661 3745907 ~ 3804511 (+) True G16623
TU24687 lncRNA upstream 210969 3594677 ~ 3598203 (+) True G16598
TU24672 lncRNA upstream 240026 3568792 ~ 3569146 (+) True G16589
TU24655 lncRNA upstream 267532 3540957 ~ 3541640 (+) True G16576
TU24652 lncRNA upstream 268374 3540416 ~ 3540798 (+) True G16575
TU24725 lncRNA downstream 2379 3815723 ~ 3821427 (+) True G16619
TU24766 lncRNA downstream 25526 3838870 ~ 3861285 (+) True G16639
TU24780 lncRNA downstream 68556 3881900 ~ 3882705 (+) True G16651
TU24793 lncRNA downstream 131257 3944601 ~ 3945039 (+) True G16664
XR_006250423.1 lncRNA downstream 174182 3987526 ~ 3991553 (+) True LOC122341104
XM_043235400.1 mRNA upstream 282258 3516390 ~ 3526914 (+) False mmd
XM_043235402.1 mRNA upstream 282258 3517701 ~ 3526914 (+) False mmd
XM_043235407.1 mRNA upstream 283771 3510076 ~ 3525401 (+) False mmd
XM_043235099.1 mRNA downstream 16305 3829649 ~ 3831319 (+) True tmem220
XM_043232053.1 mRNA downstream 61982 3875326 ~ 3877867 (+) True mrps7
XM_043235966.1 mRNA downstream 81924 3895268 ~ 3901449 (+) True sstr5
XM_043234359.1 mRNA downstream 98665 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA downstream 98678 3912022 ~ 3916436 (+) False LOC122341043
XR_006250493.1 other upstream 283771 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 486118 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 525516 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 1162422 2641212 ~ 2646750 (+) False sumo2b
TU24797 other downstream 134279 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 156171 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 543688 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 623944 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 645354 4458698 ~ 4459135 (+) False G16979

Expression Profile