RNA id: TU24766


Basic Information

Item Value
RNA id TU24766
length 342
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G16639
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3838870 ~ 3861285 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACGTCTTTTATCTGAATCACAGTCTCTCCAGAATCTTCTCGACTGTGAACTCTACATGTGTATCGTCCCTCATCTTCAGGTCTCAGGTTGTCCAGACGGAGGGAGAAGTTTCCGTGTTGAATCTGATCAGTGAAGAAATTAGCTCTATCCTGATAATCCGGCTCCTGGGACTCTGGTCGACTCTCACCGTCTTGATAGAGATGAACCAGAGTGTCTAAGTCTGCTCTTCTCCATTCCACCTCCAGCCCCCTCATTGATAAGAGTTCATCAACATAACAGGGCAGAACCACTGAAGATCCCAGAGGAGCAACCAGAGGACCAGAAGGACTGTGAACAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24725 lncRNA upstream 17443 3815723 ~ 3821427 (+) True G16619
TU24721 lncRNA upstream 23643 3800652 ~ 3815227 (+) False G16619
TU24730 lncRNA upstream 23643 3800652 ~ 3815227 (+) False G16619
TU24732 lncRNA upstream 23643 3800652 ~ 3815227 (+) False G16619
TU24739 lncRNA upstream 34359 3745907 ~ 3804511 (+) True G16623
TU24780 lncRNA downstream 20615 3881900 ~ 3882705 (+) True G16651
TU24793 lncRNA downstream 83316 3944601 ~ 3945039 (+) True G16664
XR_006250423.1 lncRNA downstream 126241 3987526 ~ 3991553 (+) True LOC122341104
TU24809 lncRNA downstream 141450 4002735 ~ 4007765 (+) False G16672
TU24804 lncRNA downstream 148295 4009580 ~ 4022148 (+) False G16672
XM_043235099.1 mRNA upstream 7551 3829649 ~ 3831319 (+) True tmem220
XM_043229612.1 mRNA upstream 25526 3809170 ~ 3813344 (+) False LOC122332297
XM_043229621.1 mRNA upstream 25526 3809172 ~ 3813344 (+) True LOC122332297
XM_043229629.1 mRNA upstream 25526 3809172 ~ 3813344 (+) False LOC122332297
XM_043235402.1 mRNA upstream 311956 3517701 ~ 3526914 (+) False mmd
XM_043232053.1 mRNA downstream 14041 3875326 ~ 3877867 (+) True mrps7
XM_043235966.1 mRNA downstream 33983 3895268 ~ 3901449 (+) True sstr5
XM_043234359.1 mRNA downstream 50724 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA downstream 50737 3912022 ~ 3916436 (+) False LOC122341043
XM_043234139.1 mRNA downstream 67063 3928348 ~ 3938422 (+) True LOC122340641
TU24749 other upstream 25567 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 313469 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 515816 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 555214 3282990 ~ 3283656 (+) True G16530
TU24319 other upstream 1192120 2641212 ~ 2646750 (+) False sumo2b
TU24797 other downstream 86338 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 108230 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 495747 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 576003 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 597413 4458698 ~ 4459135 (+) False G16979

Expression Profile