RNA id: TU24804


Basic Information

Item Value
RNA id TU24804
length 1497
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G16672
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3969515 ~ 4033526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttaaattagtttaagtCAAGTCCTGACCTCACAGAGGCTGTCAAAGGGTCTCGAGAGGTCAAGCGTCAGCAGGTTTCCCAGCAGCAGAAGCGGTTTGGGCCCCGGTggctcttttttcccctctttctgAGATTTGTACTCTGAGGAAAGCCGATATAACGCcagcaacaacagcaaaacacCCAGCAACGTACCTGCGACGGGGAAACACAGCAGAGACTCAACTACAGCCATTTTTTCAGCGCGCCACAGATGCTCTGCTGCCTTCACACCCTTGTAATACGTGCACGTGGGAGGAACCTCGAGTAAACCCAACGAGAATCTATCCTTCAAAAACAAAGCAGCCGTGAGAAAGTTGCATCACCGTCTTGGTAACGTGGCACCCTTCAGTGAACCTATGGAAATGTAATATGTGAGTGCTAGCGCCATGATAGACATATGACAAAACGCCTTTAACATCACGCAGAGGCGATATGatccaaacaaacatttattcgCTACGATACTTATAGCGGCGTTACCATGGAAACATAATCTGTATCGCTCCAACAGCGCCTCCCTCTGGCGGAGAACGAATTTGCAATCGCATACATGATGCATACACCTCAAATAAGGAGCGTCTGATCGCACACAGTTTATGTGGGGACGGATTCAAAGTTATCCCGACTATTCCTTTGAGATCCAGATCATCTCCAGACACTCCAGGTGGAGTCGTGAAGCGGTAGCTCTGAAGAAGAGACGTGAAGAACAGGAAGAGCTCCATCCTGGCCAAACTCTCTCCAAGACAAACCCGCcgtcctgagagagagagagagagagacagagagttaATGGTCTGTTGGGTTTAAAATGCTGTCTATTTAGGCAGCACACTAGGTTTTGGTACAGAGCTATTGGAGCTGACGCTCTCCGGGGCGTATTTCATGTGTGGGCTCACCTCGGCTCTGACTGTTTTCGTGCTTATTATTACCtagattttttaattactataaaGACTGCAAGAGGAACTGAActgcaaaataaagtgctaccctTTTATCTTATGCTAAAGTTTCACTGTACCTGCAGAAAAGGGTATGAAAGCGTCTCTCCTGACAAACTGTCCCTTCTCATCAAGGAAGTGTTCTGGATAATAGCTGTCTGGTTTTTCCCATTCATTTGGATCCTTCAAAACAGACGTCAGCAGAGGAATAACAGTGGTGCCCTACAAAATGGAGAAAAGACCAAAACTCAAACAAGATGAACATGGTAACTTTTCCAGACCTTATACGTATTCATTAATCTGTCTGACCTTCTTAATGAAGTAACCGTTGAAGGTAACGTCACAGGTGGTTATATGAGGGAGACTCAAGGGTACTATGTTTGCCAGTCTCTGAGTTTCATGGATCACAGCGTCTGTATACGGTAACTTCTTTCTGTCTTCCACCACCGGCTGACGTCCACCGATCACTCGGTCAATCTCCTCCTGAACTCCATCtgcacacaaatgcaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24809 lncRNA upstream 1815 4002735 ~ 4007765 (+) False G16672
XR_006250423.1 lncRNA upstream 18027 3987526 ~ 3991553 (+) True LOC122341104
TU24793 lncRNA upstream 64541 3944601 ~ 3945039 (+) True G16664
TU24780 lncRNA upstream 126875 3881900 ~ 3882705 (+) True G16651
TU24766 lncRNA upstream 148295 3838870 ~ 3861285 (+) True G16639
TU24831 lncRNA downstream 2050 4024198 ~ 4035062 (+) True G16686
TU24841 lncRNA downstream 20724 4042872 ~ 4043399 (+) True G16693
TU24840 lncRNA downstream 20784 4042932 ~ 4043399 (+) False G16693
TU25143 lncRNA downstream 127434 4149582 ~ 4150963 (+) True G16883
TU25152 lncRNA downstream 193715 4215863 ~ 4219429 (+) True G16890
XM_043231164.1 mRNA upstream 58925 3947832 ~ 3950655 (+) True LOC122333504
XM_043234139.1 mRNA upstream 71158 3928348 ~ 3938422 (+) True LOC122340641
XM_043234359.1 mRNA upstream 93144 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA upstream 93144 3912022 ~ 3916436 (+) False LOC122341043
XM_043235966.1 mRNA upstream 108131 3895268 ~ 3901449 (+) True sstr5
XM_043234096.1 mRNA downstream 99611 4121759 ~ 4134915 (+) True cfap70
XM_043234236.1 mRNA downstream 113722 4135870 ~ 4145083 (+) True hmox2b
XM_043234242.1 mRNA downstream 114331 4136479 ~ 4145083 (+) False hmox2b
XM_043234107.1 mRNA downstream 132922 4155070 ~ 4274967 (+) True coro7
XM_043234113.1 mRNA downstream 132925 4155073 ~ 4274967 (+) False coro7
TU24797 other upstream 23969 3947623 ~ 3985611 (+) True G16667
TU24749 other upstream 196277 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 484179 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 686526 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 725924 3282990 ~ 3283656 (+) True G16530
TU25218 other downstream 334884 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 415140 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 436550 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 448584 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 448584 4470732 ~ 4486464 (+) False G16978

Expression Profile