RNA id: TU25167


Basic Information

Item Value
RNA id TU25167
length 337
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G16897
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4315131 ~ 4315467 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttggAATAATTTGAGAATGAGAAATTAATGACTGAAGactttttatgggttttttgaGCGTTTGATCGTTGTGCCGGCGCTCAAATGattcataaatgaatgaaaaaactaaagaaaaatattgtcGTGGCTGGTGAAtgaatctttatttaaataactgcaCCGCTAAATCATGACGAGGATTTAATTTtccatatgtgtgtatttcatcAAGCTGATCTGTATTATGATCTTTATTTTTCCAGGCCCATTCGAGTTTGATTTAAGGCCTTCGCGGAATAGCATcgcattctcacacacactcgaatagtttactttattttaaaattaataaa

Function

GO:

id name namespace
GO:0008188 neuropeptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25152 lncRNA upstream 95702 4215863 ~ 4219429 (+) True G16890
TU25143 lncRNA upstream 164168 4149582 ~ 4150963 (+) True G16883
TU24841 lncRNA upstream 271732 4042872 ~ 4043399 (+) True G16693
TU24840 lncRNA upstream 271732 4042932 ~ 4043399 (+) False G16693
TU24831 lncRNA upstream 280069 4024198 ~ 4035062 (+) True G16686
TU25168 lncRNA downstream 1369 4316836 ~ 4317051 (+) True G16898
TU25243 lncRNA downstream 96210 4411677 ~ 4441048 (+) True G16956
TU25242 lncRNA downstream 98954 4414421 ~ 4441048 (+) False G16956
TU25245 lncRNA downstream 126549 4442016 ~ 4442308 (+) True G16958
TU25286 lncRNA downstream 143838 4459305 ~ 4462274 (+) True G16979
XM_043234391.1 mRNA upstream 38458 4275198 ~ 4276673 (+) True pam16
XM_043234107.1 mRNA upstream 40164 4155070 ~ 4274967 (+) True coro7
XM_043234113.1 mRNA upstream 40164 4155073 ~ 4274967 (+) False coro7
XM_043234119.1 mRNA upstream 40164 4155074 ~ 4274967 (+) False coro7
XM_043234128.1 mRNA upstream 40164 4178950 ~ 4274967 (+) False coro7
XM_043234177.1 mRNA downstream 2192 4317659 ~ 4328198 (+) False tfap4
XM_043234166.1 mRNA downstream 2242 4317709 ~ 4328198 (+) True tfap4
XM_043234158.1 mRNA downstream 2272 4317739 ~ 4328198 (+) False tfap4
XM_043234170.1 mRNA downstream 2762 4318229 ~ 4328198 (+) False tfap4
XM_043234191.1 mRNA downstream 3008 4318475 ~ 4328198 (+) False tfap4
TU24811 other upstream 281605 3969515 ~ 4033526 (+) True G16672
TU24797 other upstream 329520 3947623 ~ 3985611 (+) True G16667
TU24749 other upstream 501828 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 789730 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 992077 3320820 ~ 3323054 (+) True G16541
TU25218 other downstream 41565 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 121821 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 143231 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 155265 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 155265 4470732 ~ 4486464 (+) False G16978

Expression Profile