RNA id: TU25242



Basic Information


Item Value
RNA id TU25242
length 692
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G16956
representative False

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4411677 ~ 4441048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ctgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgcgtgtttaggGACTGTAAGATACTAGGTGTGGAATTAGGATCGGGAGCAATCCTCATTCCTGTCTGATACGTATTCACATTTACCAGGTTTGGAAAAGGAACGCGCcgccttttttctctccaaacTGTGGAGTTTGTACAGAGGACCTGTATTCATTTGTACAGAAAGGAGCTTGGCTactgcacacacatgcacacacacacacacacacacacacgcacacacacgcgcacacacacacacacaagaacacacacacaaacatgcgaGCAAATTGTGAAAGTTGCTCTTATTTTTCAAGGTGCCCAAATGCGTTAATTTATTGGCCTGGATTCAGTAGTTGTCTCTTAAGATGTAGGAAGATGTTCCTGTTTTTCTCGTTTGATCTCTGAAACATCAATGATGTCCCCTCCGCCTCGCGTATGAGGCCGGAGCTTCGTCTGACTGCTGATTTGTTCAAAGAGTTCTTCAGTCaacctcttttgtttttctcctcatGAAACTTGAATTGAAGGTGAACGATTCTTTAATGTAAATCATGCAGCTTGAtgacatactgtaaataaaaggaaaaaagattgAGATCGCTGTATAAACTGGTTAAGAACTTGTTTCGTACTTATATAccatattgttaaataaactgtGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25168 lncRNA upstream 97370 4316836 ~ 4317051 (+) True G16898
TU25167 lncRNA upstream 98954 4315131 ~ 4315467 (+) True G16897
TU25152 lncRNA upstream 194992 4215863 ~ 4219429 (+) True G16890
TU25143 lncRNA upstream 263458 4149582 ~ 4150963 (+) True G16883
TU24840 lncRNA upstream 371022 4042932 ~ 4043399 (+) False G16693
TU25245 lncRNA downstream 968 4442016 ~ 4442308 (+) True G16958
TU25286 lncRNA downstream 18257 4459305 ~ 4462274 (+) True G16979
TU25304 lncRNA downstream 111337 4552385 ~ 4567182 (+) False G16982
TU25312 lncRNA downstream 115773 4556821 ~ 4614430 (+) True G16984
TU25294 lncRNA downstream 124456 4565504 ~ 4629082 (+) False G16982
XM_043234085.1 mRNA upstream 9037 4357076 ~ 4405384 (+) True LOC122340527
XM_043234149.1 mRNA upstream 62661 4329686 ~ 4351760 (+) True srl
XM_043234150.1 mRNA upstream 62661 4329686 ~ 4351760 (+) False srl
XM_043234191.1 mRNA upstream 86223 4318475 ~ 4328198 (+) False tfap4
XM_043234151.1 mRNA downstream 29684 4470732 ~ 4479122 (+) True LOC122340833
XM_043234153.1 mRNA downstream 29841 4470889 ~ 4479122 (+) False LOC122340833
XM_043234152.1 mRNA downstream 29855 4470903 ~ 4479122 (+) False LOC122340833
XM_043231260.1 mRNA downstream 61004 4502052 ~ 4533340 (+) True LOC122333567
XM_043234134.1 mRNA downstream 218312 4659360 ~ 4668688 (+) True LOC122340567
TU25218 other upstream 55117 4357032 ~ 4359304 (+) False LOC122340527
TU24811 other upstream 380895 3969515 ~ 4033526 (+) True G16672
TU24797 other upstream 428810 3947623 ~ 3985611 (+) True G16667
TU24749 other upstream 601118 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 889020 3510076 ~ 3525401 (+) False mmd
TU25288 other downstream 17650 4458698 ~ 4459135 (+) False G16979
TU25277 other downstream 29684 4470732 ~ 4533298 (+) True G16978
TU25283 other downstream 29684 4470732 ~ 4486464 (+) False G16978
TU25278 other downstream 69689 4510737 ~ 4546567 (+) False G16978
TU25292 other downstream 464608 4905656 ~ 4906966 (+) True G16981

Expression Profile