RNA id: TU25292


Basic Information

Item Value
RNA id TU25292
length 1210
RNA type TUCP
GC content 0.45
exon number 2
gene id G16981
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4905656 ~ 4906966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcaacGTTAACGCGTTAACGCATgcgattaattaaaaaaaattaacgcgttactatttttttaacgCAAATTAATCGTTTGTTAAGTTTGACCCGAACTTCTTGCCATCATCGCAGCGCGGATGGTTATCTATTATTGTGTGATCAGGGTAACGTCACAGCGTCACACATGTGTTTTACAACATCCGTTTACCATTCGAACATATTCGTTGTGTGGCGCACATTATACAAAGGGTTATCGCCATGGCTTTTCGGGACAGCGGATTTGACAGCGTTTTAGCGAAGTGCCGTAAAATAGTCGTATCCAGTAAGTGCAGCGCTAGCACAGCAGAAGCATAAGTTAGCGATGCTAACCTCAGCTGATTACGACAGATTGGCAAAGCTGGAAACATTGCTGGAACCTTGCAGGTACATCACTGAGCTCCTAGGAGGTGAAAAGTATGTATCCTGCTCTGTGGTGCTACCTGCGCTGTGCCATCTCCTGCGTACAATGGAGGTTTCTGATGTTGACCCTGCCTACATAGTGCGCTTCAAGGCTTCATTCACAAAGGATCTCAACAAGCGGAAGGAGAGCTCAAATATGTGGTGGTTAAAGATAGCAACAGCTCTAGACCCCAGGTTCAAGGACCTTAGGTGCTTGTCCAAATCAGAGAGGAGAGAGGTGTAGCTGAGTGTGATGAAGGATGGAGAACCTGCTCCACAGAGCTCTGGAGAAGTAGAAGACCCAGAGCCACCAAAGAAGAAAATGGCCCTCCTAATGATGGGATCAGAGTCAGAGTCTGATGATGAGGCTCTGTCCACAGATAAATGTCTGGAAAGGTACAAGGGAGAGCCCTATGCCAGCATAGACACATGTCCACTACAGTGGTGGTCAGCACACTCAGGTGCCCATCCTAAGTTAGTCTGTCTGAGCAACCGGCTGAAAGAAGAGGATGTTGTATGAGTGGTTAGAAGGAGGAATGTTGCACAGATGCACACTCTAGAGACTGTTCATTTTGTCTCTGTacagacacttaatttctaaaatagaCCTGATTGTTAAGATGATAACTGGAGGATCTGTCTCTTTGAAgtagttttattatacatttattttggatgaagaatgtagagactgtttattttgtatttttgcagactttcatttctgaaatagtattataatagaaatgttaattGAAATGTTAATTGTTGAGATAATAAAACTGGAA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25289 lncRNA upstream 2377 4898839 ~ 4903279 (+) True LOC122333539
XR_006248640.1 lncRNA upstream 2770 4900424 ~ 4902886 (+) False LOC122333539
XR_006248639.1 lncRNA upstream 2776 4899497 ~ 4902880 (+) False LOC122333539
TU25365 lncRNA upstream 38338 4865208 ~ 4867318 (+) True G17018
TU25338 lncRNA upstream 111622 4792546 ~ 4794034 (+) True G17003
XR_006250507.1 lncRNA downstream 5728 4912694 ~ 4914493 (+) True LOC122341984
TU25378 lncRNA downstream 85030 4991996 ~ 5035379 (+) True G17026
TU25379 lncRNA downstream 85030 4991996 ~ 5009423 (+) False G17026
XR_006250492.1 lncRNA downstream 300278 5207244 ~ 5211693 (+) True LOC122341773
TU25426 lncRNA downstream 301690 5208656 ~ 5208867 (+) True G17059
XM_043235479.1 mRNA upstream 11049 4892115 ~ 4894607 (+) True LOC122341832
XM_043235366.1 mRNA upstream 75175 4827437 ~ 4830481 (+) True LOC122341768
XM_043229580.1 mRNA upstream 85000 4812939 ~ 4820656 (+) False wdr48b
XM_043229598.1 mRNA upstream 85000 4812975 ~ 4820656 (+) True wdr48b
XM_043229589.1 mRNA upstream 85000 4812987 ~ 4820656 (+) False wdr48b
XM_043235740.1 mRNA downstream 1385 4908351 ~ 4934319 (+) False LOC122341982
XM_043235743.1 mRNA downstream 11414 4918380 ~ 4934319 (+) True LOC122341982
XM_043235739.1 mRNA downstream 11414 4918380 ~ 4934319 (+) False LOC122341982
XM_043235741.1 mRNA downstream 11414 4918380 ~ 4934288 (+) False LOC122341982
XM_043235742.1 mRNA downstream 11414 4918380 ~ 4931845 (+) False LOC122341982
TU25278 other upstream 359089 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 372358 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 419192 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 446521 4458698 ~ 4459135 (+) False G16979
TU25239 other upstream 467455 4437288 ~ 4438201 (+) True G16955
XR_006248137.1 other downstream 650042 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 690133 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1191235 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1285774 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 1285774 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile