RNA id: TU25423


Basic Information

Item Value
RNA id TU25423
length 213
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G17056
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5254500 ~ 5257752 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgtgtgtgtgtgtgtgttttttttgcaatgttgATACGATTTGAAATGGTTGAAAAAGTCATCGATAAAGTCAGTGATATTATCACGGATGATCCGCCTCGTCCTCGGTAACCCGAAGGAGTCATAAGAGATGTATTCAAGCCAAAGGAGAGACGTTAACCGTGTTTTGATCCGATTCTACAGTACAGGATCATGGAGACGATCATCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25428 lncRNA upstream 34395 5219650 ~ 5220372 (+) True G17061
XR_006250492.1 lncRNA upstream 43074 5207244 ~ 5211693 (+) True LOC122341773
TU25427 lncRNA upstream 43302 5211034 ~ 5211465 (+) False LOC122341773
TU25426 lncRNA upstream 45900 5208656 ~ 5208867 (+) True G17059
TU25379 lncRNA upstream 245344 4991996 ~ 5009423 (+) False G17026
TU25459 lncRNA downstream 52776 5310528 ~ 5312371 (+) True elof1
TU25502 lncRNA downstream 148018 5405770 ~ 5406163 (+) True G17112
TU25524 lncRNA downstream 158042 5415794 ~ 5480607 (+) False nfil3-2
TU25526 lncRNA downstream 192787 5450539 ~ 5517864 (+) True G17115
TU25519 lncRNA downstream 216790 5474542 ~ 5480607 (+) False nfil3-2
XM_043235578.1 mRNA upstream 13441 5239573 ~ 5241326 (+) True gadd45gip1
XM_043235385.1 mRNA upstream 263373 4987440 ~ 4991394 (+) True nme4
XM_043235088.1 mRNA upstream 271029 4963561 ~ 4983738 (+) True xpo6
XM_043235850.1 mRNA upstream 292787 4958012 ~ 4961980 (+) True antkmt
XM_043235852.1 mRNA upstream 296908 4952520 ~ 4957859 (+) False si:dkey-282h22.5
XM_043235154.1 mRNA downstream 22427 5280179 ~ 5282321 (+) True swsap1
XM_043235847.1 mRNA downstream 52741 5310493 ~ 5312308 (+) False elof1
XM_043235013.1 mRNA downstream 151847 5409599 ~ 5413133 (+) True LOC122341561
XM_043233978.1 mRNA downstream 158006 5415758 ~ 5425268 (+) True nfil3-2
XM_043228696.1 mRNA downstream 293444 5551196 ~ 5556139 (+) True LOC122331179
TU25292 other upstream 347801 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 708200 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 721469 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 768303 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 795632 4458698 ~ 4459135 (+) False G16979
XR_006248137.1 other downstream 299256 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 339347 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 840449 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 934988 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 934988 6192740 ~ 6195022 (+) False LOC122341437