RNA id: XR_006250492.1


Basic Information

Item Value
RNA id XR_006250492.1
length 747
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122341773
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5207244 ~ 5211693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaagcagcgtgGTGGGAGAGCAAAAGCAAACGAGTCGGTTTTCTCCGTTGATACCGGAAGCAGAAGAACCGGGTTGCGGGACGGGCCCGTGGATCGGGGAAAACGGCCAACTTTTACGCGCGGAAACTTTCGCGAGGATCTTTCGGCAcgaacaaaaccaaaaacaaacaaacttcgCCTTCGTTCGAAACCGGAGAAGATCGAGCACGAGCGTTCTCTCCGTTCACCGAAACTCTCCGCGGGGCTACTCGGAGCTGAAAAGACGGCCATGAAGCTCAGATTCAGCTAAGCAACGGCCGGGGCCAGGAATGCTGACCTTGGCGGGTGAACCGGGCCGACGATTGAGGCAGTGAAACCCTAAATGCTTCCACCGAAGGAGAAATCCGGCCCAAAGATCGGATTTCATAAAGAATCGATCGCTCGAAACATCCCGGCAAACACCTAAAAGTGGGCTGAAACTCGTCgggtttgaatgttttgtgaaCATAATTCACGACTCATTATAATATAGCCCGATATAAAAATGGACAGCGTAATATGTTTAAGATAATGAAACACGCTTAATTGCGATCTATGCATTTTCTCAAGCTTCGTTTTTGCTTTGACAATCCGTTTTAATAGTCGGGTGaataactgaatttaaattCCATTGCAAATAATTATCTGTAAGAGAGAAATCCAGACAAGACACactaatgaaattaaatatattaaaatggcgCATGCATTAATTTACGATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25378 lncRNA upstream 171865 4991996 ~ 5035379 (+) True G17026
TU25379 lncRNA upstream 197821 4991996 ~ 5009423 (+) False G17026
XR_006250507.1 lncRNA upstream 292751 4912694 ~ 4914493 (+) True LOC122341984
TU25293 lncRNA upstream 300924 4905656 ~ 4906320 (+) False G16981
TU25289 lncRNA upstream 303965 4898839 ~ 4903279 (+) True LOC122333539
TU25428 lncRNA downstream 7957 5219650 ~ 5220372 (+) True G17061
TU25422 lncRNA downstream 42807 5254500 ~ 5257752 (+) True G17056
TU25423 lncRNA downstream 43074 5254767 ~ 5257752 (+) False G17056
TU25459 lncRNA downstream 98835 5310528 ~ 5312371 (+) True elof1
TU25502 lncRNA downstream 194077 5405770 ~ 5406163 (+) True G17112
XM_043235385.1 mRNA upstream 215850 4987440 ~ 4991394 (+) True nme4
XM_043235088.1 mRNA upstream 223506 4963561 ~ 4983738 (+) True xpo6
XM_043235850.1 mRNA upstream 245264 4958012 ~ 4961980 (+) True antkmt
XM_043235851.1 mRNA upstream 249385 4952501 ~ 4957859 (+) True si:dkey-282h22.5
XM_043235578.1 mRNA downstream 27880 5239573 ~ 5241326 (+) True gadd45gip1
XM_043235154.1 mRNA downstream 68486 5280179 ~ 5282321 (+) True swsap1
XM_043235847.1 mRNA downstream 98800 5310493 ~ 5312308 (+) False elof1
XM_043235013.1 mRNA downstream 197906 5409599 ~ 5413133 (+) True LOC122341561
XM_043233978.1 mRNA downstream 204065 5415758 ~ 5425268 (+) True nfil3-2
TU25292 other upstream 300278 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 660677 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 673946 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 720780 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 748109 4458698 ~ 4459135 (+) False G16979
XR_006248137.1 other downstream 345315 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 385406 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 886508 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 981047 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 981047 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile