RNA id: TU25833


Basic Information

Item Value
RNA id TU25833
length 662
RNA type TUCP
GC content 0.63
exon number 2
gene id G17302
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5597099 ~ 5598232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCAGATAGCAGTTTACGTTTCTTGAGTTCATTTTTCACTTTGTCCTCCAGTTTTGCCGACAGTCCCTTCTgcaccagctgaagtttgtccCTTACTGCATCCTCAATAGTTTCCACCTGAAGCACACGCTGCATTAATAACGCATTGGCCAACAGATTCAGGCTCGATCTGTCCCGTGTGCGGACGTAACTCACGGTTTTGAAGACTCTTGGTCCTCCCTCATGAGCTTTATCCAGACGGATCCATTTGTTGGACATGGCTTTGCTGAAACCAACCTTCCCGCTCggcattCATGAGTTCGTTCTGCGGCAGACCCTCGTCCGGGATGGCGATGAACACGCGGGCTTCGTGACTGCCCTGCTCCGCGATCTCACGGCCCTCTCCCGTCAGCTCCCAGCGTTTGGAGGACTTCTGCTCCGCCGAGATCACCTGAGGACagcatccaaacacacaaacggTTACATGTTTCTGTTACAAAGCGGCATAAACGCTGATACTCATAGACAGGGTCAGGAAAACCAGGAATGCTCTTGccaatgtacaaaaatatgctACAAAACACAGGCCCTTGAAAAGAGCTGCAATGTTTAACAGTATAATATGGCAAAACAtagatatacagatagatagatagatagatagatagatagatagataga

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25831 lncRNA upstream 2552 5593986 ~ 5594547 (+) True G17300
TU25526 lncRNA upstream 79235 5450539 ~ 5517864 (+) True G17115
TU25524 lncRNA upstream 116492 5415794 ~ 5480607 (+) False nfil3-2
TU25519 lncRNA upstream 116492 5474542 ~ 5480607 (+) False nfil3-2
TU25502 lncRNA upstream 190936 5405770 ~ 5406163 (+) True G17112
TU25853 lncRNA downstream 49013 5647245 ~ 5648079 (+) True G17315
TU25863 lncRNA downstream 92303 5690535 ~ 5695636 (+) True G17322
TU25848 lncRNA downstream 136857 5735089 ~ 5737125 (+) True G17312
TU25885 lncRNA downstream 153749 5751981 ~ 5752280 (+) True G17337
TU25984 lncRNA downstream 347061 5945293 ~ 5947708 (+) True G17405
XM_043233910.1 mRNA upstream 16358 5574401 ~ 5580741 (+) True gcdhb
XM_043233911.1 mRNA upstream 16358 5574401 ~ 5580741 (+) False gcdhb
XM_043233912.1 mRNA upstream 17795 5574401 ~ 5579304 (+) False gcdhb
XM_043228624.1 mRNA upstream 22885 5566565 ~ 5574214 (+) False LOC122331145
XM_043228643.1 mRNA upstream 22885 5566872 ~ 5574214 (+) True LOC122331145
XM_043234821.1 mRNA downstream 218811 5817043 ~ 5821892 (+) True tufm
XM_043234827.1 mRNA downstream 326997 5925229 ~ 5933647 (+) True amdhd2
XM_043234828.1 mRNA downstream 327021 5925253 ~ 5933647 (+) False amdhd2
XM_043234842.1 mRNA downstream 339200 5937432 ~ 5942586 (+) True slc25a19
XM_043234818.1 mRNA downstream 350917 5949149 ~ 5954642 (+) True LOC122341440
XR_006248137.1 other upstream 31125 5557008 ~ 5565974 (+) True LOC122331163
TU25292 other upstream 690133 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 1050532 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 1063801 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 1110635 4470732 ~ 4486464 (+) False G16978
TU25994 other downstream 499969 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 594508 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 594508 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other downstream 594508 6192740 ~ 6195022 (+) False LOC122341437
TU26041 other downstream 594508 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile