RNA id: TU26760


Basic Information

Item Value
RNA id TU26760
length 377
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G17930
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7829484 ~ 7829860 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAATTTTGCACACTTCTGCTTGCAGAACTGCTTCAGCCCAGTGACATTTGTAGGCGTTGAAGCGTGAAATGTGTTCCACAGATCCTGACACTTTAACCATACTTTGTTGGGGTTTAATTCTGGAATCTGACTGGACCATTTCAGAATTTTAGCTTTCGTTAAGGATCATTATTATTGAGCATAACCCAGTCAGGCTTCAGATGGAATATAAAAACCAGaggttttacatttacaaactaGCAAACAGTTTTTgacagttgttgttttgttttgtttattttcttatgaAATGCAGACAGAAAAGGCTTGAATATCTTCAGACATTTCTTCTTTGTGACTCCTGGAATAAttttgtgtctttctctctgacaAAG

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26758 lncRNA upstream 3642 7825186 ~ 7825842 (+) True G17928
TU26754 lncRNA upstream 8844 7820310 ~ 7820640 (+) False slc27a1a
TU26730 lncRNA upstream 101300 7671703 ~ 7728184 (+) True G17912
TU26695 lncRNA upstream 237958 7585473 ~ 7591526 (+) False LOC122331592
TU26696 lncRNA upstream 237958 7585473 ~ 7591526 (+) True LOC122331592
TU26763 lncRNA downstream 11183 7841043 ~ 7841669 (+) False LOC122341274
TU26765 lncRNA downstream 12479 7842339 ~ 7842968 (+) True G17934
TU26767 lncRNA downstream 13721 7843581 ~ 7844217 (+) True G17936
TU26768 lncRNA downstream 15364 7845224 ~ 7846045 (+) True G17937
TU26817 lncRNA downstream 70051 7899911 ~ 7900147 (+) True G17973
XM_043232314.1 mRNA upstream 8406 7808243 ~ 7821078 (+) True slc27a1a
XM_043232334.1 mRNA upstream 21722 7801296 ~ 7807762 (+) False ptger1c
XM_043232326.1 mRNA upstream 21722 7804679 ~ 7807762 (+) True ptger1c
XM_043232298.1 mRNA upstream 32831 7786116 ~ 7796653 (+) True LOC122334406
XM_043235710.1 mRNA upstream 103965 7656033 ~ 7725519 (+) False baiap2a
XM_043234650.1 mRNA downstream 9096 7838956 ~ 7841570 (+) True LOC122341274
XM_043234654.1 mRNA downstream 130217 7960077 ~ 7962976 (+) True LOC122341279
XM_043229244.1 mRNA downstream 144683 7974543 ~ 7977890 (+) True LOC122331730
XM_043234655.1 mRNA downstream 320883 8150743 ~ 8152894 (+) True LOC122341282
XM_043231970.1 mRNA downstream 325511 8155371 ~ 8166377 (+) True srebf2
XR_006250506.1 other upstream 103965 7656032 ~ 7725519 (+) False baiap2a
TU26266 other upstream 1272734 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1272734 6504915 ~ 6556750 (+) True G17590
TU26040 other upstream 1634462 6192740 ~ 6195022 (+) False LOC122341437
unassigned_transcript_276 other downstream 119901 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 119944 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 120994 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 130211 7960071 ~ 7962295 (+) False LOC122341279
TU26834 other downstream 134889 7964749 ~ 7966194 (+) True G17988

Expression Profile