RNA id: XM_043234650.1


Basic Information

Item Value
RNA id XM_043234650.1
length 777
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122341274
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7838956 ~ 7841669 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACCAAGTTGCAGAATTTGGAATAATCTTTTTTCGGTGACCAAACCAGGGTTTTATTAAGCCCGCGTTTATTTTTCTTGCATGCTAACAAAAAAAAGCGAGCGTCTCAAAAGATGTCAAAATCCCTGTCGTTTCGGTTGCAAAGTAAGCTCCATAATGGAGATAATGACCAAAACGGCAATAGAAGAAATATGCAAAATTGTAGACAGCGATTTTGCGTTTTTACGACAAGAACTGTCTCGAGTCATGGGTGAAAACACAGTTCTCAAGGACAAAATGCTCTGTTTCGGGAGCGAAAGGCACGAAGAAAGCGTCACAAAGGAAGAAGCGCGCGCTGGCTCCAAAATATATCGCTCTATTTGCGTTCAAACCGAAGACGGAGAGCAGCCCTCCATCAAAGGCATATTTGGAAAGGAGTGGTGCTCCAGTTTATGGGATCGGAGGAACGAGTCCAGAGAAGATGAGCTGGCGATCGATGTCGACCTGTACAGCGTGTCGCCTCATAAGCACAGAGAACAAGAGCACTCCGACCTGGTCATAATCAAAGAGGAGTGTTTTGAAGTGGACACTTATCCCAGTTATACAGGGAAAACGCCCCCAGCTTCGAGAGGACAACCAACATCTTCTGCATATGAGCCAGTGGTAGACTCAAAAAGTTTTGATGGCCATTTTGTGTCCGCCGAATTTTCAGAGCTATCGGAAATACAAAACACCTCCTCCGATTCTCAGACAAACACTCTAGGAAAAACTCCATCGATGAGGCTGTCGACCAGTTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26760 lncRNA upstream 9096 7829484 ~ 7829860 (+) True G17930
TU26758 lncRNA upstream 13114 7825186 ~ 7825842 (+) True G17928
TU26754 lncRNA upstream 18316 7820310 ~ 7820640 (+) False slc27a1a
TU26730 lncRNA upstream 110772 7671703 ~ 7728184 (+) True G17912
TU26695 lncRNA upstream 247430 7585473 ~ 7591526 (+) False LOC122331592
TU26765 lncRNA downstream 769 7842339 ~ 7842968 (+) True G17934
TU26767 lncRNA downstream 2011 7843581 ~ 7844217 (+) True G17936
TU26768 lncRNA downstream 3654 7845224 ~ 7846045 (+) True G17937
TU26817 lncRNA downstream 58341 7899911 ~ 7900147 (+) True G17973
TU26820 lncRNA downstream 74292 7915862 ~ 7923629 (+) True G17976
XM_043232314.1 mRNA upstream 17878 7808243 ~ 7821078 (+) True slc27a1a
XM_043232334.1 mRNA upstream 31194 7801296 ~ 7807762 (+) False ptger1c
XM_043232326.1 mRNA upstream 31194 7804679 ~ 7807762 (+) True ptger1c
XM_043232298.1 mRNA upstream 42303 7786116 ~ 7796653 (+) True LOC122334406
XM_043235709.1 mRNA upstream 113437 7656033 ~ 7725519 (+) False baiap2a
XM_043234654.1 mRNA downstream 118507 7960077 ~ 7962976 (+) True LOC122341279
XM_043229244.1 mRNA downstream 132973 7974543 ~ 7977890 (+) True LOC122331730
XM_043234655.1 mRNA downstream 309173 8150743 ~ 8152894 (+) True LOC122341282
XM_043231970.1 mRNA downstream 313801 8155371 ~ 8166377 (+) True srebf2
XM_043231979.1 mRNA downstream 313801 8155371 ~ 8166377 (+) False srebf2
XR_006250506.1 other upstream 113437 7656032 ~ 7725519 (+) False baiap2a
TU26266 other upstream 1282206 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1282206 6504915 ~ 6556750 (+) True G17590
TU26040 other upstream 1643934 6192740 ~ 6195022 (+) False LOC122341437
unassigned_transcript_276 other downstream 108191 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 108234 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 109284 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 118501 7960071 ~ 7962295 (+) False LOC122341279
TU26834 other downstream 123179 7964749 ~ 7966194 (+) True G17988

Expression Profile