RNA id: TU26817


Basic Information

Item Value
RNA id TU26817
length 237
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G17973
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7899911 ~ 7900147 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGACTGAGATCCAGCTCTTGGGTGACTCTCCTCTCTCTGGGTGTTTGCAGTAGTAGAAACCCTCATGTGACTTTGAGACATCAGAGATGATCATCTCTGTAGTTTGACTCTGGATGAGTGATCCATCTTTATAGAAATCAGCTCTGAGGTCTGGTGGGGTTGAACGTTGATATAAACAGCGTAGAGTCAGAGAATCTCCTTCAGTCACAGGATGAACAGGACTCTCCAGAatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26768 lncRNA upstream 53866 7845224 ~ 7846045 (+) True G17937
TU26767 lncRNA upstream 55694 7843581 ~ 7844217 (+) True G17936
TU26765 lncRNA upstream 56943 7842339 ~ 7842968 (+) True G17934
TU26763 lncRNA upstream 58242 7841043 ~ 7841669 (+) False LOC122341274
TU26760 lncRNA upstream 70051 7829484 ~ 7829860 (+) True G17930
TU26820 lncRNA downstream 15715 7915862 ~ 7923629 (+) True G17976
TU26837 lncRNA downstream 84333 7984480 ~ 8085629 (+) True G17990
TU26839 lncRNA downstream 84333 7984480 ~ 8145025 (+) False G17990
TU26844 lncRNA downstream 88979 7989126 ~ 8092242 (+) True G17993
TU26845 lncRNA downstream 90952 7991099 ~ 8092242 (+) False G17993
XM_043234650.1 mRNA upstream 58341 7838956 ~ 7841570 (+) True LOC122341274
XM_043232314.1 mRNA upstream 78833 7808243 ~ 7821078 (+) True slc27a1a
XM_043232334.1 mRNA upstream 92149 7801296 ~ 7807762 (+) False ptger1c
XM_043232326.1 mRNA upstream 92149 7804679 ~ 7807762 (+) True ptger1c
XM_043232298.1 mRNA upstream 103258 7786116 ~ 7796653 (+) True LOC122334406
XM_043234654.1 mRNA downstream 59930 7960077 ~ 7962976 (+) True LOC122341279
XM_043229244.1 mRNA downstream 74396 7974543 ~ 7977890 (+) True LOC122331730
XM_043234655.1 mRNA downstream 250596 8150743 ~ 8152894 (+) True LOC122341282
XM_043231970.1 mRNA downstream 255224 8155371 ~ 8166377 (+) True srebf2
XM_043231979.1 mRNA downstream 255224 8155371 ~ 8166377 (+) False srebf2
XR_006250506.1 other upstream 174392 7656032 ~ 7725519 (+) False baiap2a
TU26266 other upstream 1343161 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 1343161 6504915 ~ 6556750 (+) True G17590
TU26040 other upstream 1704889 6192740 ~ 6195022 (+) False LOC122341437
unassigned_transcript_276 other downstream 49614 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 49657 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 50707 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 59924 7960071 ~ 7962295 (+) False LOC122341279
TU26834 other downstream 64602 7964749 ~ 7966194 (+) True G17988