RNA id: XM_043234662.1


Basic Information

Item Value
RNA id XM_043234662.1
length 1715
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC122341292
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8980591 ~ 8988810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCGGAGCTTGACAGAACTCATTTAATGGGCAAACGTTTATTAATTCAAGCACAGTGTGGAAACGTTGCGAGGGGACAAGATCGGTAACTTGGAACTCACGGATCCACGGACTGGTCATTCACCTTCAGCCGTTTACAAATCCACCTGttcattcaattaaatATGTTGAAAGTGACATTAGGCCTCGCTCTGGTGACTCTGGTTGCTTGCTCGCAGTGCCCCAACAATGAAGTGTGTGAGGCAGGCCAGACATGCTGCCAGGATCCCACCGGAGAATTCAGCtgctgccctttccataacggagaGTGCTGTGAGGACCACCTGCACTGCTGTCCTGAATACATGCTGTGCAGTGTTACAGACTCCATATGTGAAAACGCTACACTTGCAATGCCGTTTGTGAAGAGGATACCAGCTAAACAGACAGACCATCCCAAATCGTTCAGAATGATTCCCTCATTACCGGCGAGTGAGAATGATATCACCTGTCCTGATGGCTCCTTCTGTCCTGCTGAGTTCTCCTGTCTGCTGATGGCTTCATCATATGGGTGCTGTCCTGTAGCACAGGGTCTTGTGTGCTCAGATGGGAAACACTGCTGCCCAAAAGACCATGAATGCAGTGCAGACAGCAAGTCCTGTGTCAAACTAAAAGAACCAGTCAAGACTGTTCTTTGTGGAAATGGGATCTCAGAGTGTCCCGTGGACACCACATGTTGTGAGGCAGAAGATGGTCAGTGGGCATGCTGTCCAGTGCCAAAGGCTGTATGTTGTGATGATAAAATCCACTGTTGTCCAGAGGACAGTGTCTGTGATGTTGAAGCCTCCAAGTGCATGTCCTCCACCAATCAGGAGCTGCCTATGTGGGACAAGTTCCCTGCTCGTCTTAGAGCTGAATGGGAAGATCACAAACCTGCAGAAATGGGAGCTGAAGCTGAACTCACTACAACCAGACAAATCACTACTGCTGGCAACCAAATGACTAGCCTGCCTGGTGTACTACCAAAGACCTCTGACGTTCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAGGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGCTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACGCTTTAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTTAAAACAATCAGCAGCCAGGATGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTGCCCTGCAATGACACAGCGGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGGATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGTGATGACTCTTCAGGATCTCAGCTCTGGTTCGAGAAGCTGCCCGTCAAAACAATCAGCAGTCAGGTTGGGGCTGTTACACAAGTGACTTCGGTGCATTCAGATGTCCCCTGTAATGACACAGCAGCCTGTCCAGATGGAAGCACATGCTGTAAGACTAAAGAAGGAGAATGGGCCTGCTGTCCTCTGCCACAGGCTGTGTGTTGTGACGACTTCATCCACTGCTGTCCTCATGATACGACATGTAACACTGCTGCTGGGTCTTGGTACCTCTAA

Function

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0048675 axon extension biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27278 lncRNA upstream 98469 8881198 ~ 8882122 (+) True G18261
TU26937 lncRNA upstream 238289 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA upstream 304705 8671661 ~ 8675886 (+) True G18092
TU26949 lncRNA upstream 490174 8474293 ~ 8490417 (+) True G18055
XR_006248186.1 lncRNA upstream 666101 8312389 ~ 8314490 (+) True LOC122331402
TU27303 lncRNA downstream 22883 9011693 ~ 9012178 (+) False pgls
TU27339 lncRNA downstream 193730 9182540 ~ 9183276 (+) False brd4
TU27326 lncRNA downstream 195589 9184399 ~ 9185581 (+) True LOC122341719
TU27353 lncRNA downstream 261289 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 273160 9261970 ~ 9262239 (+) True G18305
XM_043230932.1 mRNA upstream 715 8976324 ~ 8979876 (+) True LOC122333359
XM_043235775.1 mRNA upstream 125826 8835129 ~ 8854765 (+) True LOC122342001
XM_043228383.1 mRNA upstream 272309 8704444 ~ 8708282 (+) True LOC122330982
XM_043235571.1 mRNA upstream 320075 8616280 ~ 8660516 (+) True LOC122341890
XM_043225538.1 mRNA upstream 404878 8565400 ~ 8575713 (+) True ddx47
XM_043225635.1 mRNA downstream 21240 9010050 ~ 9012115 (+) True pgls
XM_043225627.1 mRNA downstream 24285 9013095 ~ 9021646 (+) True colgalt1a
XM_043234664.1 mRNA downstream 35568 9024378 ~ 9041533 (+) True LOC122341294
XM_043225839.1 mRNA downstream 54628 9043438 ~ 9064147 (+) True lmx1al
XM_043235532.1 mRNA downstream 78836 9067646 ~ 9083475 (+) True atp13a1
TU26907 other upstream 417215 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 429440 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 455857 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 464137 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 827766 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 195718 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 195718 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 705822 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 750986 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 810005 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile