RNA id: XM_043225635.1


Basic Information

Item Value
RNA id XM_043225635.1
length 963
RNA type mRNA
GC content 0.49
exon number 13
gene id pgls
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9010050 ~ 9012178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGGTTAGATCGCGTGAGGGGCACGTATAGGAAATCTCACTATTAAGAAAACATTCATTGagAATTATGTCTGGACGAAGAGTGGTGGTTTTCCCCTCAGTGACCGAGCTTGGATGCTCTCTGGCCCAGCTGGTGTTCTCACGAGCAGAAAAAGCTCTCAGCACAGGTGCAAGCTTCTCTCTGGGCCTTTCAGGAGGTTTGGTGTCCATTCTGAGTAAGGAGCTGCCCGCTGTCCCAGACCTGGACTGCAGCAAATGGCTCATTGGATTCTGCGACGAGAGACTCGTTCCATTCAGTGATCCTGAAAGCACATATGGGAACAACatgttaaaaAATCAGTTGTTTGGGAAAATCAGCATTCCGGAAGAAAGGATTTTGGCTATAGATCCTGCGTTACCCGTGCAAGAATGTGCAGATGACTATGCTGGCAAACTGAGCAAGGCTTTTAACACAGAGCAAATTCCAATTTTTGACATGCTGTTGCTGGGAATGGGATCAGATGGACACACCTGCTCTCTCTTTCCAGATCATCCTTTATTGCAGgaAAGCCAGAGGACAGTGGCACCCATCTCTGATCCCAAACCACCGCCTCAACGTGTCACATGACGTTACCCACAGTTAACTCCTGCTCGATGCGTAGTGTTTGTGTCAACTTGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTGTTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGCAGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGCCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTACCCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTG

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0017057 6-phosphogluconolactonase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27283 lncRNA upstream 21440 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 127928 8881198 ~ 8882122 (+) True G18261
TU26937 lncRNA upstream 267748 8514149 ~ 8742302 (+) False G18048
TU27001 lncRNA upstream 334164 8671661 ~ 8675886 (+) True G18092
TU26949 lncRNA upstream 519633 8474293 ~ 8490417 (+) True G18055
TU27339 lncRNA downstream 170425 9182540 ~ 9183276 (+) False brd4
TU27326 lncRNA downstream 172284 9184399 ~ 9185581 (+) True LOC122341719
TU27353 lncRNA downstream 237984 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 249855 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 401529 9413644 ~ 9414007 (+) True G18425
XM_043234662.1 mRNA upstream 21240 8980591 ~ 8988810 (+) True LOC122341292
XM_043230932.1 mRNA upstream 30174 8976324 ~ 8979876 (+) True LOC122333359
XM_043235775.1 mRNA upstream 155285 8835129 ~ 8854765 (+) True LOC122342001
XM_043228383.1 mRNA upstream 301768 8704444 ~ 8708282 (+) True LOC122330982
XM_043235571.1 mRNA upstream 349534 8616280 ~ 8660516 (+) True LOC122341890
XM_043225627.1 mRNA downstream 980 9013095 ~ 9021646 (+) True colgalt1a
XM_043234664.1 mRNA downstream 12263 9024378 ~ 9041533 (+) True LOC122341294
XM_043225839.1 mRNA downstream 31323 9043438 ~ 9064147 (+) True lmx1al
XM_043235532.1 mRNA downstream 55531 9067646 ~ 9083475 (+) True atp13a1
XM_043230019.1 mRNA downstream 72249 9084364 ~ 9089675 (+) False LOC122332643
TU26907 other upstream 446674 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 458899 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 485316 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 493596 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 857225 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 172413 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 172413 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 682517 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 727681 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 786700 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile