RNA id: XM_043233737.1


Basic Information

Item Value
RNA id XM_043233737.1
length 7226
RNA type mRNA
GC content 0.52
exon number 20
gene id brd4
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9138467 ~ 9183290 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCTCGTTTCAAGCGTCTGACATTGACAGATGTGTATTAATGGCGGGCCGTGGTTGTTTCACGCTTTTGGCAGCGTGATCGGCGCAGTCTGTGTCTGAGCTGGTGACTTCTCTCTGGACGGTGTGAAAGCAGCTCTTCTGCTGAGTGCTCCTGGAGAAGATGTGTGTGCTCAGATAAGAGACTCTTCACACGAGAGACAAAAATAGAGCCCAGCGAGGAGTGCAATGGAATTAGCGGTGCTCTCCCTGTGGAGCCCGCGCCCGGCTCGAGACTGAACGAGTGGTGTCCGGCCCCACCCCCTCCCGTCCCTCTGCCCGCGATCCACCCCACCAGTATGGGGGACGGCCTGGACGCAGTGCAGATGTCAGGGAGCAGCAGCAGTCAGGGGCAGCCCTCGTCCCAGGGCCCTGGCATCTTCAACCCCTGCCCCCCAGAAACCGCTAACCCTACCCGGCCCAAGCGCCAGACCAACCAGCTGCAGTACCTGCTGAAGGTGGTGCTGAAGACTCTTTGGAAGCACCAGTTCGCTTGGCCTTTCCACTCTCCTGTTGACGCCGTTAAGCTGAATCTGCCTGACTATTACAAGATAATCAAAAACCCTATGGACATGGGAACAATCAAGAAACGCCTAGAGAACAGTTACTACATCAATGCCCAAGAATGTATTCAAGACTTCAACACCATGTTTACCAACTGCTACATTTACAATAAGCCTGGGGATGACATAGTCTTAATGGCAGAAGCACTGGAGAAGGTGTTCCTCCACAAGATTTCAGAGATGCCCCAGCAGGAGGTTGAGATGACGACCACAGCCGGCAAGGGTCGTGGCCGGGGCAGAAGGGATCCAGacaTGAACATGAAAATTGCACCTGGCCTGGAGTCTTCGCCCACAATCCCTCAAACACGTGGCCTTTCCAGTCTTGCACCTGGGCCACAAACAAGAGGACCACCGCAGGGTCCGCCTACTTTACCTCCCCAGCCTACCATGCAAGCCTTGCCCCCTCGAGTACCCCCTTCGCTCCCCTCTCTCCCCTTGCTCCCTTCGCTCCCCACGATCCCTACACTCCCTACACACCCTACACACCCTCCCCTTGCACCTCAATTAGGGCCACCTTTTTCTATGGGCCCCACTGACTGCACCACACAGGTCCCCATCATAACGGCTGTGCCTCCTTCGACCCAAACCTCCCTGCCACCCCTGCTCATGCAGCAGAGCGCCCCTTCTATTCTACAAAGCCCCATCCCAATGCCTCACAAACAGCagagaaaaagtcagaaaagGAAAGCAGACACCACAACACCAACTGCAAACGACCCGCTGAACGAGTCCTCGCCCGCTGAGTCCAAGTCAGGAAAGACTCTGCCACGCCGGGATACTACACGACCAAGCAAACTATCCAAAAAGGAGGCACCGGACTCCCAGCACCATTGGACACCAGTCACTGGGACCCACAGCCCCAAACAACAAGAGCAGCTGCGCTACTGCTCCGGCATCGTAAAGGACATGTTTGCTAAGAAGCATGCAGCGTACGCTTGGCCCTTCTACAAGCCAGTGGATGTGGATGCTTTAGGGCTGCACGATTACCATGACATCATAAAACATCCCATGGACCTCAGCTCTATTAAGGACAAGTTGGAAAACAGACAATACAGAGATGCTCAGGAGTTTGCAGCAGATGTACGGTTAATGTTCTCCAACTGCTATAAGTACAACCCTCCAGACCATGAAGTGGTGGCTATGGCACGCAAACTGCAGgatGTGTTTGAGATGCGTTTTGCTAAAATGCCAGATGAGCCAGAGGAAATGCTGGCACCCGCTCCTGCGCCAGTGCTCCACCCGGCTCCTGTGAAGACACAGCCACCCATGGGTACAGCGTCGTCCTCGGACAGCTCCAGCGATTCCTCTTCTGAATCAGACTCCTCCACGGACGACTCTGAAGAGGAGAGAGCCCAGAGGCTGGCAGAGCTTCAGGAGCAACTGAAAGCGGTTCATGAGCAGCTGGCTGCCTTGTCCCAGCCTCAGGCCAGCAAAccaaagaagaaagagaaagaaaagaaggagaagaagaaagacaagCACAAAAAGAAAGCGGGAGTCATGCCTGCACTGGAAGAGATCTTGGATCCGCCTCCTACCCTCAAGGCTCAAGGAAAGCCTAAGAACAAGGATCCTCTGCCTAAGAAGCCCAAGAAGCTGAGCAAGAAAGAGGGAGGTAAGGGCAATCGCTCCATGGCTCCTGCAAGTGCTGCTCCACCAACCCTGCAGCCTGTGGTCGGCCTGGATCCTGAGGAGGACCTGGGTCTGACTGGAGGAGCTGCAATGGCAGGCATGCCTGCTGGAGAGAAATGTAAACCTATGTCCTATGAAGAAAAGAGACAGCTGAGCCTGGACATTAACAAGCTGCCTGGAGACAAGCTGGGCCGTGTGGTCCACATCATCCAGTCCCGTGAGCCCTCGCTTAAGAACTCCAACCCCGATGAGATTGAGATTGACTTTGAGACATTAAAGCCTTCTACGCTGCGGGAACTGGAGAGATACGTGTCGTCCTGCCTTCGCAAGAAGAAGAAGCCTGCTGGTGTTCCAGAGAAGTCCATGGAGGCAATGAGTGCTGCAAAGACAAAAGGCTCATCATCCGAGTCAGGCAGCAGCAGTGAGTCCAGCTCCTCGGAAAGTGAAGACTCAGAGTCTACAGGTGAGCCCTGTAGATCTATAACACATGGTTTGACTTCTAAGCTGAAGAAGAGGGGGAGAGGAGAAGGAAAGAAGGCTCATCACCCGGTGGTTGCTCCAGGCATGCCTCAGCCTCAAGTTCCCCATCAACCCCAGACCCCTGCTCTGCAGCCCAGTGCTCAGCTGAagccgcagcagcagcagcatccgTCTCCTGCTGCTTACATGCCTCCTCCTGTCACAGCTCTGGAACCCTCGCAGCTCCTGGAAAACCCCTTTGACCCTCTGGCCCACTTCGTCCAGCCCCTCATGCACCTTCCCCACCATGCCAATGACTCGCCCTCCCCTGCACCGCCTCACCTCAACGCTCACCCTCCAGGAGGCCCAGTGTCTCCTGAGACGCACCCATTCCTCAATCAGCACCCCATCCTCCCATCCCCAGCCCTGCACAACGCCATGCCCCAGCAGCCTTCAAGGCCCAGTAATAGGGCAGCCCCGCTACCTCCTAAACCTCCGCAGCAAAGCACgccccagcagcagcagcagccccAGCAGTCCCTGCCACAGCAGCTCCAGTCCCAGCAACCCCCTCAGCCCCAGCACCACCTCCCTCCTCACCTGCTGCACCCTCCCCAGCAGATCCGCCAGCGGCCCCTTTCCCCTCCCACGCTCACTCCCCAGGGCCTGCTGTCCTCCCAGCCCCCACAGATGCTGCTAGAGGACGACGAGGAGCCCGTTCCCTCCATGCCCCTGCCCATGTACCTGCAGCACCTGCAGCCCAGCCGCCTGCAGCAGCAGCCGCCGCCGACGTCACTGATGCAGTCTTTGCAGAGCAGGCCACAGCCGCCGGGCCAGCAGTCTCTGCTGCAGTCGGTACAGGTTCAGTCTCAGATGAGCCAGCAGAGCTCTCTGCCCCCACCGCAGATCCCCGTTCAGACTCAAGCGCAGCCCTCCCCACAGCTCTCGCAGCATCAGGCCAGACACATGCAGCACTCGCAGCTGAGCTTCTCTCAAGGCCCTGTGCAGACCACGCAAACGCAGCCAAGTCAACACAAAGTCTCCATGCCCTCCTCGAAAGCACAGCAGATTATCCAGCAGCAGCCACCGCAGCATCACTCTCCACGTCAACACAAGTCTGACTCCTATAACTCAGcacaCTTGCGAGATAACCCCTCCCCGCTCATGATGCATTCCCCTCAAATCTCTCAGTATGCTTTAGTCCACCAGTCCCCTCCTCAGGTCCCCAAAAAGGAACCACAGCAAGGTCCTTCAGCTTTGGGTGGCATTAAAGAAGAGAAGCTGCCTCCTTCACCTGTAATGCGTGGTGAGCCCTTCAGTCCAGCCATGAGACAAGACCCTCATAAACACCCTGAGAGCAAACCCACAATGCCAGGCCACGGCCAACAGAAAGCAGAAATGAAACCACTTGAAAGTTCCCGTCCTGTCATCCGCTCCTCTGAGCAGAGCGGTCCACCGCCTTCCATGCAGGACAAAGAAAAATTCAAACAGGAGCCCAAGACTCCTGTGGCGCCTAAAAAGTTATTCGACGTCGCTATGCCTCATAACGTGTCCTCGTTTGGTGGCCAGGATGTGAAACTGAAGAACATGGGTTCCTGGGCGAGCCTGGCACAGAAATCCACCTCCACTCCCTCATCTGGTCTGAAGTCCTCCAGCGACAGCTTCGAACAGTTTCGGCGCGCGGCCAGAGAGAAGGAAGAACGGGAGAAAGCCCTGAAGGCCCAGGCCGAGCAAGCTGAGAAAGACCGCCTGCGCAGAGAACAAGAGAAACTTCGGGGACGAGATGAAGAGGACTCCATCGAGACGTCTCGAAGGCCTCAGGAGGAGCCCCGCAGGCGGCAGGAGCAGCAGCAGGTCCAGCcaccgcagcagcagcagcagcagcagcagcagcaccaaACTCAGCCCCAAGCCCAGAGTCTGGCCCAGCCGCCCTCGGCCCCGCAGCCCTCCCAGGGCCCGCCCCAGTCCCCCGCTGCTTCCCAGAGTGCACttgaccagcagagggagcttgCACGTCGCCGGGAacaggagaggaggaggagagaggcgATGGCAGCTACTATTGACATGAATTTCCAAAGTGATTTGATGGCTATCTTTGAGGAGAACTTGTTCTGAAGCGCGAGAGGAAGCGAGAAACTGCGTAACTGCTCATGGATTCTCCTCTGCACGGACAGAATGAACTCaaaaagcagtaagggaaaaagACCCCACCTGACCACACGAAACACTGAAGAGGCTGAACTAGCGATGCATAAGCTGAGGCCCCGAGAGGGAGGTTGTAGCTCTCCTTTTGCCTTAGCAGAAAGAGGGACCCTCACACTGGGACGGCACCGCCTCTCCGGCATTCCTCCTGGATTTGCCATTGTGACCATGGCGGGAAAGAGAGGACTCGTGTGACTCTTAATGCAGAATATGGGAGCAATGGACAATGTGATTGCTGGAGGAATATCTGAACGACAACAATGAAATGTACTGATTCTCTGTACTACGGCATCCATCGACCGCCAGATGTCTGTGGgggattagaaaaaaaaaacgtctttgTTTCCTGTTTGATTTGGTTTCCCTCCCATCGTTTCATTTTGGCCCTATATCCTTTCCCCATCCCCACCCCACCCCCCCACACCCCTTTTTCGCGAGGCAAACGGCAGGATGGGATCGGGGGGCACTTAAGATGATCTTCCTCGGGAGAGGAAGTCCAGCTCGCCTTACACCTCTGACTCGTAACCACGACAAAACAATATTCACCAGGGGCTGTGACAAATGACTAAACATGGTGTTTCTCACACTGTTATCATGTGCAGATTTTTCATTATGTAGGATCTACTGTAAAAAGGTATTTTCTTAATTACTGTTTTGGTTGATTGGTTGGTTgtacttttgtttctttcttttttcgttgtttttttttttgttttgtttttttttttttaagatatttttaactcTCTTACCAACACCTTACCCTCTGACGTCTATGCCAAACACCTCTATCCTTTTGCGCTGATAGCCGAGACCCGAAACGCTTCACTCTTAACATGtctttctaaatatataaatatattttcttgttcTCCCCACTCGTCATTAAAAGTTTAGGTAGCCTTGTAGAAGATAAACCctaatatatgcataattctGACAAGTGTTAATTGAGGACAGAATCATGAAGATATACTTTCATTGCTCATCGTTTTCACGTAAAGCCGCCCGGTGAGGAGTCTCGCCTGCGGCGGGCGGTTTCTGAGCATCCTTTagtttgaatataatttaaaagaatacgAGAGCTATTTTAAGTGTATTATACGTATAGAAGGAAAACACGCAACTCTGCGCAACTGGTACACGCGTCCGAGAGCGTCGTGCGAACACCGGGCCAACGCGACGGAGCTCTCAGCTGGTTTCTGCATgactcctctttttcttttcacagatcATTTTATTACACCTGCGCAGAGAGAACTCTGTATGCTGTGCTAGATATAATTACGAAAAATTtcgaaaggaaaaaaaagctacaaaaaggaaaaaaaatcaaaccgtTCTGATTTATCATTGTTCTTGTTCGATTATAGTGGATGTGTTCTAATTCTGTTATTTGACTCAGCAAGGGGGCGGGGTGGGCACAATTCGAGACCTTGGCAGGTCCTCTGAGTTTTCTCTTATAGTGTTTTCTCCAGTGCCTGTATTGTATTGCGATTCTAGTTGGCATATATTATGTTATGGGGGTGGGGAGGGCCATGGTTGAACGGGGAGGGGAAAAATGGGGTTTAGGGGTGAGAGCTTGTGTTTAAGAGACAAAAACggaaagtaaacattttatattttacccaTTTACAATATTCAGGTTTAAATCTAGTTTTAGCTGGACTTCTTAATTATACACCGAACAACTAGTTTTTCGTTATTTTTTCGAAAATGCAAAGAGGACATGTCTGATCATCGTCATCgacgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgtttgTCGGTATGTGGCTGGGGAGGGTGTTCTCACCCTGAGGTTTCAATCGCAACAACACCATTTAAATGATgctttgcaaactttttttttggttcttgtTCTTCTTCATGAAGTCCACacttatataaatatctattatttctttttcttttgttaatttgGTCTGTAAAAGTTCAAAGAAGAGAAACACTTCATTCCTTCAAGCCTTtacatgtattttcttttccatGGTAACAGTTGGACATTATGTGCCATAGATTCGGATTTTCCGGAGAATGTGCTGACCTGCAGCTCAGCAGAGAGTTTGCTTTATTCaggtattttgtcattttctttttttttttttttttttttttttttttcttttgggttTGTTCAGCATTTTCCTCGATTACTGTTTGGTATGTGCGTGGGCTATCGAGGTCAATGGTTCAATCTGTTATGATCATGAAATAAACTCATCTCTTTTATAgaaaattaaaaggaaacaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27303 lncRNA upstream 126940 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 150508 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 256996 8881198 ~ 8882122 (+) True G18261
TU26937 lncRNA upstream 396816 8514149 ~ 8742302 (+) False G18048
TU27326 lncRNA downstream 1109 9184399 ~ 9185581 (+) True LOC122341719
TU27353 lncRNA downstream 66809 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 78680 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 230354 9413644 ~ 9414007 (+) True G18425
TU27532 lncRNA downstream 301145 9484435 ~ 9484736 (+) True G18429
XM_043229555.1 mRNA upstream 11384 9093815 ~ 9127734 (+) True pbx4
XM_043230019.1 mRNA upstream 49443 9084364 ~ 9089675 (+) False LOC122332643
XM_043230027.1 mRNA upstream 49443 9084507 ~ 9089675 (+) True LOC122332643
XM_043235532.1 mRNA upstream 55643 9067646 ~ 9083475 (+) True atp13a1
XM_043225839.1 mRNA upstream 74971 9043438 ~ 9064147 (+) True lmx1al
XM_043235292.1 mRNA downstream 1195 9184485 ~ 9185597 (+) False LOC122341719
XM_043235488.1 mRNA downstream 5846 9189136 ~ 9199702 (+) True stxbp2
XM_043235489.1 mRNA downstream 19541 9202831 ~ 9206354 (+) True LOC122341842
XM_043235848.1 mRNA downstream 23364 9206654 ~ 9212934 (+) True xab2
XM_043235689.1 mRNA downstream 30954 9214244 ~ 9245657 (+) True camsap3
TU26907 other upstream 575742 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 587967 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 614384 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 622664 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 986293 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 1238 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 1238 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 511342 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 556506 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 615525 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile