RNA id: TU27434


Basic Information

Item Value
RNA id TU27434
length 3202
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC122331343
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9134043 ~ 9138089 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACTTTTCCTAAGACGAGGGACATTTGCCGCACAGAGCCTGCGTCTCCGTATCCATTATAATCACTAAAGTCATGAGCAATTCTTTAATGCACCTGCTTTTATTTCCAACTCGACTGAGCTTATGGATTCTGTCTttagtatattatattgtgGTGTACGGCACAGCTCTAATCACCGCTTGTTTGGTTCTGATCCGAATCGTCTGGACTGGATTCAGAGATCCATACGGAACTTTTCACTGGACCGTCCGGAAGAGACCCCCAGACTGCCTGAAGGACCCTGCTTTCGGTGACCACGCGTATCTGAAGGGCAGGGTGAGGGGATGTAGAATGAAAACTGCgaacatttattcatgtgacgtctctaataacatttaacaaagtAATATGTGGAAGTACACCGctgaagttttaaataaaacgagTAGAAAAAGGAGTAAGAAAAACACTACTCCAGACTTAAAATGGCGCTTTAATTCAATgtgttgccttttttttcttttgcataatTCACAAGTGATTTCCGAGTGCGTTTTGTTTGTGAGTAAATAATTGTTTCCAGGGTGATCCGTGTTCGTTCTTTAGCgagaaagtttttttattattattaattaataatttttttattattactgaacaGTACAAACGTTATAACATagatacaaatatacataaagacaaaaaaaatgcgAGAAAGGTGAACGGAAGGCTAAATCGCGATCATCATCCATATCTTGTGCTCTTGCGCCATCTGTGTTTAGACACAAGAACAACACGGCGTTTCTCGATCTGGTTCCGTTCCTTTGTCTTTAATGAAATCGCACTAAAAGCGTGACCCACGCTGGAATTTATGCCTTTTCAAAatctttctaaaatgtaatatgcattaGATTGCCGCAGTGGTAGGTGATTGAAAATAGTGGCGAGGTATCCGCAATTTATTCACTTACTTGCTTTCtactaataatgataatataataaccTGACATGTCTCTTTTTATCCTTTAGAGCTCAGGCTTGAGGTTTCATTACGTCACCAAAGGAGACCACAGAAAGCCTCTCATGCTGTTTCTTCACGGCTTTCCAGAAAACtggtcactttttattttatttctgctcaTTTTATATTGTAGATCGGGGTGcggaaaagcacacagaaacttCAGCTAGtggtttattaatattgtatcaAATCGTTATCGCAGTGTAGACGTCTTTTATGTTTATAGGAAGCagattattgtattttatgaacGCATATGACCTGCAGGTTCTCCTGGCGTTACCAATTGCAGGAATTCAGCGGTCACTTCCACGCGGTGGCGCTAGATCTGCGCGGCTGTGGAGGTTCTGAAGCACCAGTCCTGCTGGAGGAATATTCTCTGGACACTCTCTTATACGATATCAGAGACACCATCGATGAACTGGGTACTTACTGATTACATCGCACATTAATAGTAGCAGCCCCTGGACATACACCAAGGCCGGGAAGATCTGGGGTCGCACTGTAGGTTATGATTAACCTGTAACTAACCTTTAAAAGCTGTTCTGCACTCAACGACTAAACACGTGCAGAAGACATGCGTGCATACATAGAATCAATGGACAGTTCAGGCATAAACTGTCATCCAGTTGTTCTGAACCCgaatgtctttctttcttctgttgagcactagagatgttttaaagaatgaCGGTTTAaacagttgacggtagccattggcTTCCATAGTGTGTACCATTGGCTACAGTCAACTGCAAAATCAGAAACTCATACTGACGAATGATGATATTGATAGTGCATGTTGATTTTGAGTTTTACGAGATGTGGAAAAATTTAGCAAGCTATGGGTTGTTTAGCGAACAGAAACAAACAAGTTATTTAGAGGCtatgtttctattttttattatggtttGTCGCTTTCGATATAATTTTTCTTCAGGGTGGCCCGTACGGATGGGCCATGGCCGAATGCGAACCGGTTTTGTGTCAGTCAGTGAACCGCTGGAATGACGTGTTTAATTACAGGTCACACAAGCTGTATATTGGCGGGGCATGACTGGGGTGGGATGCTGGCGTGGCATTTCGCACTGGAAAGGCCAGACATGGTGCAGCTTCTCATTATCATGAATGCCCCTCATCCTGCCTCGTGGCTGGGTAAGTGCGCATGCCGACAATTTCCAAAACGGGGGCATCGTTTCCGTTTTCATATCATTTCAACCCAAAACTTACGCAGGTGCAGACAACTGATACTCGTTTGTGTAAAACCCAGACGCCGTACTGAGAAGACCCTCTCAGCTGTTACGTTCAGGACATGCTTGTTTCTTCCAGTTACCAATGCTGCCAGAATTGATTTTGTCCCTTGAGGATTTCAAGGTAGCGTGAACTCTTTTGACTATTAGGTCTTGAACCCCAACCACCAATGTTTGACAGCGTGGTTAACATTTTGTGGTCGTTTCTGTTATGACATTACCATTAACGTAACAGGAAACACAAAAGACGCTCTAAGTAACTTCCTGTCTATTCGATTTCAGTATAATGGTGTCGTTTCAAAAGTGGTTACAGCCGACTTGTATCTGTCGCGTGCATATAGTTGGTTCGAAGTCTATTTTGTGGCAAGAATTTGGGAATCAGGAACAAATCCAGACGACTGACTGAGACCCAGCTGGAGGGGTATCTATATCGTCTGTCCCACCCCGGAGGACTCACAGGCCCTCTGAACTACTTTCGTTCTCTTCTCAGTAACGCTCTGTACAAGCATCAGGATGTGGCTGCGCCCTGCATGTTAATTTGGGGTGAGGCAGATAGTATACTGGTTGAGGGGACGTCCGGTGGAACGCGGCCTTATGTAAGGGGTCCGGTTGTCATTCACACTATTCCTGAATGCAGCCACTGGGTACAGCAAGATCAACCTGACAGAGTCAACAAGCTCATATGGGACTTTGTTCTGGATAAAGACATCATAAAACACAATCGCTGATCGCCTTTGATGCAATGAAGACATCACGAAGAGTTAATAACAAAGAGTTATTAGCACTAGCAAGGTTTCTGGTTTCCACTGAGAAAATAACTAGGCTAATTGCATTTAGCCCGGGTTTTCTTAAACgagtaataatataaaagttatataattTCTGTTCAGTAAACTGTCTCACAGTTTTTGTTGTATAAATGATGTCAGGAAATATTTATAGGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27431 lncRNA downstream 292 9133614 ~ 9133813 (-) True G18357
TU27372 lncRNA downstream 6376 9124956 ~ 9127729 (-) True G18320
TU27380 lncRNA downstream 111799 9021920 ~ 9022306 (-) True G18326
XR_006250531.1 lncRNA downstream 126106 9007613 ~ 9007999 (-) True LOC122342131
TU27302 lncRNA downstream 128101 9004854 ~ 9006004 (-) False zgc:113210
TU27477 lncRNA upstream 45147 9182539 ~ 9183271 (-) True G18378
TU27489 lncRNA upstream 61216 9198608 ~ 9199702 (-) True G18388
TU27528 lncRNA upstream 276012 9413404 ~ 9414007 (-) True G18426
TU27547 lncRNA upstream 343929 9481321 ~ 9485355 (-) True G18439
XR_006250528.1 lncRNA upstream 375054 9512446 ~ 9533787 (-) True LOC122342127
XM_043229550.1 mRNA downstream 1300 9129812 ~ 9132805 (-) True lpar2a
XM_043225847.1 mRNA downstream 67302 9065001 ~ 9066803 (-) True LOC122329549
XM_043234663.1 mRNA downstream 126662 8992714 ~ 9007443 (-) True zgc:113210
XM_043229851.1 mRNA downstream 142186 8989124 ~ 8991919 (-) True LOC122332528
XM_043234661.1 mRNA downstream 304614 8805688 ~ 8829491 (-) True LOC122341290
XM_043235696.1 mRNA upstream 108984 9246376 ~ 9251223 (-) True nr5a5
XM_043235698.1 mRNA upstream 114919 9252311 ~ 9254408 (-) True soul5
XM_043235697.1 mRNA upstream 118049 9255441 ~ 9260491 (-) True shfl
XM_043229924.1 mRNA upstream 128381 9265773 ~ 9294849 (-) False notch3
XM_043229915.1 mRNA upstream 128381 9265773 ~ 9294849 (-) True notch3
TU27085 other downstream 735277 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 822756 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 915050 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 925012 8207764 ~ 8209093 (-) False LOC122339740
XR_006248283.1 other downstream 1119404 8011441 ~ 8014701 (-) True LOC122331739
TU27537 other upstream 289180 9426572 ~ 9462905 (-) True G18433
XR_006250486.1 other upstream 1256922 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 1641709 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 1642710 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 1874544 11011936 ~ 11064583 (-) False lrrc4ba

Expression Profile