RNA id: TU27563



Basic Information


Item Value
RNA id TU27563
length 581
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G18454
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9571154 ~ 9571734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTGTACTGTTCCCAGGTCCTGAAGAAGTTGACAGAGCCATCCTGTCTCCTCTGGATAACGGTCCAGCCACCCTGAGCTCTGCTCTGGTCACACCAGGCCTGCAGAAGTTTGTTAGTATTGCGTGGTCGCAGCAGGTAGATACCGCTGGTCTTCTCCCCTGACTCCAGCACATGATGACAGTCATCCCACGGCccttttaaagagacagtatattttattcagtatttatttatgaataatgtattaaataattcataatgaataaatatttatcaatAATTCATGTCCCTAATACAGTTTTTGAAGGTGGCAATCAAGTGAACAGGTAACTACGCATTGTTCTTTGGTTTAGGTTTGATTGGATATTATggcaaaaacatttaacataaaaaatattgctgGTGTTTTCGGGGTGAAAACAAACCAGTGTTGTATAGTATTAGTTGTCTTGTCTTGGTGTGGAGGAGCTGGATGGATGGTAAAGGGATACGGTTCTGTTGGTTCAGAAAGCAGCAAGGTCATGACCTGTATACTGTATACAACCATCTCTCAGCCTTTACTTATCAGTTCAACATTGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU27562 lncRNA upstream 871 9570038 ~ 9570283 (+) True G18453
TU27551 lncRNA upstream 27788 9541700 ~ 9543366 (+) True G18443
TU27532 lncRNA upstream 86418 9484435 ~ 9484736 (+) True G18429
TU27527 lncRNA upstream 157147 9413644 ~ 9414007 (+) True G18425
TU27355 lncRNA upstream 308915 9261970 ~ 9262239 (+) True G18305
TU27565 lncRNA downstream 1450 9573184 ~ 9574262 (+) True G18456
TU27566 lncRNA downstream 2555 9574289 ~ 9574489 (+) True G18457
TU27569 lncRNA downstream 3147 9574881 ~ 9575902 (+) True G18458
TU27567 lncRNA downstream 3507 9575241 ~ 9575694 (+) False G18458
TU27568 lncRNA downstream 3507 9575241 ~ 9575902 (+) False G18458
XM_043235676.1 mRNA upstream 83966 9428864 ~ 9487188 (+) False olfm2a
XM_043235675.1 mRNA upstream 83966 9462389 ~ 9487188 (+) True olfm2a
XM_043235655.1 mRNA upstream 170344 9353698 ~ 9400810 (+) True col5a3a
XM_043235656.1 mRNA upstream 170344 9353698 ~ 9400810 (+) False col5a3a
XM_043229938.1 mRNA upstream 303424 9260905 ~ 9267730 (+) True zmp:0000001048
XM_043235555.1 mRNA downstream 5991 9577725 ~ 9582385 (+) True ppan
XM_043235559.1 mRNA downstream 10640 9582374 ~ 9586218 (+) True p2ry11
XM_043235558.1 mRNA downstream 16276 9588010 ~ 9591291 (+) True eif3g
XM_043233746.1 mRNA downstream 84818 9656552 ~ 9666605 (+) True icam3
XM_043235722.1 mRNA downstream 95833 9667567 ~ 9672804 (+) True LOC122341977
TU27323 other upstream 385494 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 385573 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 1007778 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 122898 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 168062 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 227081 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 454084 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1181025 10752759 ~ 10781853 (+) False kcna7

Expression Profile


TU27563 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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TU27563 Expression in each Bioproject

Bar chart with 2 bars.
TU27563 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.