RNA id: TU27565



Basic Information


Item Value
RNA id TU27565
length 1079
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G18456
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9573184 ~ 9574262 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATTCTTACTCTTTTTCTAAGGCAAGGCTCATTTTTACTATTGCTCTTACTTTGGGTTAAggatttgaacaaaccccttattgtaaatattaaactttACGTAAACCATTTGTGCTGCAGACATGAATTAGACTTCAAATGTGGTGGATTGCTGAAGCATTTTTACCAAGGTTTTCACTCTGAGAATGATAAAACAGGCAAAAAGGATGCGTTCGCATCAAAGGAGGGACAACGCTGAGTCATTTAAGTAATTGTTAGGTCGTTCAGTACACTGAAAATCCTAGAAAACGCAGTTGCAACAAactaaaaaacagtcaaaaccgCAGTGGCAGCTACACCCCCTTTAAAGGTTTTAGGCTACCTGGAGATTTAGTCACAGGGTAACTGGTGAAAGGTATGTCTGTTGGCAGAGTGGGCAAGCCATCCAAGGTCTCCAGCAGTTCCGGAGGGCTCTGTTCCTGGTGCAAAGGGACACTTTGGTCTCTTTGGATATTTCTGGCCACTCCTTCGTGCTCTGTGTTCTCATCCACAAACTCACTTGACTGTTGAACCGGAAGTGATGTGGTTTCCTGTAACGAAATTCATGCTAAATGTGACATGGCAACGGCTGTTTGTTCGTGGATTGTCCAAACCTGAAAGCTCAGACTCACGGAGGAAGAACTTAAGAGTTGAGGAACGGTTGGATGCAAATGCAGacagtgtttattaaaacaataacaaaacacaagaaaaaactAATCCAAGATGCAAGACGCAAACCACAGGCTGAGCTCATTGACGTCATCCGTTAAAGAACACCACAAGACTACGGCACCATCTCAAATGGCACACTTCATGTGCTTTTACGCTCTAGTGGCTGCTGTGTACGCTGGCGTTTGCTATTTGCCGCCTAACACTGAGGCAAGCTACAAAGCAGACTTTTATCATACATTCAAAATGCCCTTTTGTAACGAAACATGCTGCCTCAGAAGAAAGCCACGAGGTGCCATTTTGGAACAGGGCCAATGAATACAGGAAACACACGGGCTACAAATAGGGGTTAACAAGACTAACTAAACACAGCTGGAAACAAGCAAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27563 lncRNA upstream 1450 9571154 ~ 9571734 (+) True G18454
TU27562 lncRNA upstream 2901 9570038 ~ 9570283 (+) True G18453
TU27551 lncRNA upstream 29818 9541700 ~ 9543366 (+) True G18443
TU27532 lncRNA upstream 88448 9484435 ~ 9484736 (+) True G18429
TU27527 lncRNA upstream 159177 9413644 ~ 9414007 (+) True G18425
TU27566 lncRNA downstream 27 9574289 ~ 9574489 (+) True G18457
TU27569 lncRNA downstream 619 9574881 ~ 9575902 (+) True G18458
TU27567 lncRNA downstream 979 9575241 ~ 9575694 (+) False G18458
TU27568 lncRNA downstream 979 9575241 ~ 9575902 (+) False G18458
TU27582 lncRNA downstream 28380 9602642 ~ 9603064 (+) True G18470
XM_043235676.1 mRNA upstream 85996 9428864 ~ 9487188 (+) False olfm2a
XM_043235675.1 mRNA upstream 85996 9462389 ~ 9487188 (+) True olfm2a
XM_043235655.1 mRNA upstream 172374 9353698 ~ 9400810 (+) True col5a3a
XM_043235656.1 mRNA upstream 172374 9353698 ~ 9400810 (+) False col5a3a
XM_043229938.1 mRNA upstream 305454 9260905 ~ 9267730 (+) True zmp:0000001048
XM_043235555.1 mRNA downstream 3463 9577725 ~ 9582385 (+) True ppan
XM_043235559.1 mRNA downstream 8112 9582374 ~ 9586218 (+) True p2ry11
XM_043235558.1 mRNA downstream 13748 9588010 ~ 9591291 (+) True eif3g
XM_043233746.1 mRNA downstream 82290 9656552 ~ 9666605 (+) True icam3
XM_043235722.1 mRNA downstream 93305 9667567 ~ 9672804 (+) True LOC122341977
TU27323 other upstream 387524 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 387603 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 1009808 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 120370 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 165534 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 224553 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 451556 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1178497 10752759 ~ 10781853 (+) False kcna7

Expression Profile