RNA id: XM_043233977.1


Basic Information

Item Value
RNA id XM_043233977.1
length 4281
RNA type mRNA
GC content 0.38
exon number 3
gene id aanat2
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9692949 ~ 9697915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAAGGGAGactgttacaataaaaatacattttaacacgAGATGgtcagttttaataataaaatcccatttttgaaaaatatgataCTCAAACCTCCATTAGGTGGCGGCAAATCACAGTTCAATTAATAAGTCGTGAAATCATTCCCTTCGCTCAAAAggatttaaaaatagataaaaaaaaatgtatttgcccAGTGGCGCTCTTCCTTTGGTATTGCTTATCTatgtatagtttttaaaaactcatATAGCCAGGCATAAGGTGCTTATGAGAAAACTATGAACTGCtcgaacaaacaaacatggcGTCCTCGTGCAGTCTCATGATGACACGGGTGCTTTTAAAAGCAGGTGAGTTACACAGTCACAAAATAAAGCACATACCCTATTTTCATTGTCTGAGCATGTTAGCGGATTACCGCAGATATATTTGGTCGTGATGAGTCATGCTCAAAAACACTAACAGCTCAGCCGACTATAACGTGACagtgtttggggtcattgttAGCGCTGAATCATAATAGATGTTATTCCCTGCGAAACACGATTGCTGTAAACGCTCGATTTTTTAATATCAAGTGACTACTGAACATAGTCATAACATGTTAAAATGCGTATATCTTGACTGGAGAAACATAAGGATGCTGAAATTGTTTTGTGAAGACTGTACACTGAGCAGCAGTTCAGCTGGTGATTGGAATTACCCCGAAAGGTCGTCGAAGGTCAAGGCATCTTAAAATGAAGTAGGTCCTCTTATCATGTCATTGGAGGTCGAGCATTAACCCAGAGCTTCCTCTCATTGAGTGTGACGTAGCTGGAGGTAAAGAGCTGGATTCCTCAGGCTTCAGCCAATTATTGAACTAAGTCACTAGACTAGATATATTTAGTTTGTCTGATGTCATTCAGCCTTTAAAGTGAAAGCTCCTTAAACTGTGTCGAtgtgaaaaggaataatatttaaagacaaaatacacAGCTAATTTTCTGTATGGGTTGCCAATTTAAACAAAAGGCAAAACTACccaacaaaatgtacaaaatgaaaatatactatccaaaaataatatttttgatagtattttatattagattCACACTTGATTTGGCAGATTTTTAGGTAAACGTAAACCAGGTTATATTCAGAAAAACGCTTATCGCTTCACTTTCCTTTTAATTAGGTGTCCAACCCTCTCTGGGATGACAAAAATATCAgttaataaatatcaaaacatataCATTAATTTCCAGACAttcagatttcttttatttacaaaaggTGTCAGTAAAGAcgttcacatttattttacaagtaAATGCTTTATATTCATCATCCTGAAAAGAAAGCATCGTGGTTTCCACAAACATATGAAGCAGCATAACTCTTTTCAACCTGCAAATCAACATTTATTAGCTTgacgtcacaggaataaatgagattttaatatattaaaatagaaaacgaTACATTCGGATTGTGAAGatactttatacttttacagttttactgtatcaaataaatacagccttggtaagcatttactttaacaaacattaaaaaatcttacagacctcGTTTATTAGtctggaaaaacattttaatagtgaATAACATCCTTATTCTCTTTTCAAGCACTGCCTTGCTGAATTTGGTAACACCAAATACGTAAGGGCTGGCGTAAACTCTACAAAGCTCATTTTGGCTGTACAATCAGTTTCTGGGTAAGCATTGGGAGGCGCGCCGCGAGTAGGCTATTAGCGCACAGACTCTTAGGAAATTGCTGCGGCTTCACGTGGCACGTGCGCACATCACTATCCCTCTAAAGACGGGGCACTTTAGCAGATCGGGGCGGGCCGGGACAAAGAGAGGGACTGGGGGAGGAGGGTTAAAGAGGAGGAGGTATAGTGTGATAGGACTCAAACACTTCTGACCGCAGAAGAGAGCGGCCGGACAAATCCACCGAGGGAAGGACAGCTCTGAAGTGAGGAGAAACTAAGAGCCGAGGAGGCCGAGTTAGTTTTGCAGACCGAACTGTCCTCCAGCCGTCAGAAGTGCGCGCGTGTCAGACCATGGCACCGCAGGTCGTCAGCTCACCCTTCCTGAAGCCCTTCTTTCTGAAGACACCTCTTAGCGTTGCCAGTCCTCGACGCCAGCGACGACACACGTTACCCGCCAGCGAGTTTCGAAATCTCACCCCACAGGACGCCATTAGCGTGTttgagatagagagagaagCATTCATCTCCGTTTCCGGTGAATGTCCGCTCACGCTTGATGAGGTGCTTAGTTTCCTGGGCCAGTGTCCCGAGCTCTCGATGGGATGGTTTGAAGAGGGTCAGCTGGTGGCCTTCATCATTGGATCTGGCTGGGACAAAGAGAAACTAGAACAGGAGGCCTTGACCACACACGTCCCAGACTCTCCCACGGTACACATCCACGTGTTGTCTGTGCACCGCCACTGTCGGCAGCAGGGCAAAGGCTCCATCTTGCTTTGGCGATACCTGCAGTACCTGCGCTGTCTCCCCGGGTCACGCCGGGCCCTGCTGGTCTGCGAAGAGTTCTTGGTGCCTTTCTACCAGAAGGCTGGCTTTAAGGAGAAGGGTCCCTCGGCCATCAACGTGGGGGCTTTGACCTTCACAGAGATGGAGTATCAGCTCGGAGGCCTGGCTTATGCACGACGAAACAGCGGATGTTAATTTCTGTAGCTCATTTTATCCTGATTCGGGACACCATGCGTAGATTCTGGACAGCTCTCGGCAATCACTGGCTCAAAGCCCTTCCAGCTCCTGAGCAAGAACCAGAGACTTACCTATGCACTCATTTAAAGAGATCGAACCAGTTACATTTGGGTATACGAAGGTTAAAGGTGTTGGTTGTTTGCTGCGTTTTTTTCTTGTGTACTGCCCAAGATACACTGCACACTTTACTGGTCAAAAAACAGTGGCTGTTTTTAACGATTTAATGAGGATTTTGTTCTTTGGAAAAccatattcattaaaaaaaacaatttgttgttgatgaatacaaaatatattaattttaatcaaatttaacattcttctgtaaaaaaaacaacaaaaaacattcaaaatgttaggtcagaaaaataataaaataatttaaaatttgaaaattgtattttttatatgttcCCAACTCTTGGTTTGCAAATGGACAatgaaatgttgatttttttattgttgtagaATAAAACCTTTCTGCATTTGTGACGATGTGCTTTGGAAATGCAaactatgtatacagtgtatgAACTGATGTAAACTTTAACGTTCTCTGTGGCATTAGTCATACTCTCATGCATAActaatcaataaaaatacaaatctaacAACAAAGCTATATTTTTGTCATGTGTATTTTTCTATGCACAGTGGTTGAGAAAacatttcagtaacactttacaatatagTCAGATGCTGATTGCAGCTGACGATACTGACGCATACAACTTTTGATTTCAATcatgtattagtaaatgttgaaaataacattaagaTTGAGCTTTAGAagtatttctcatttttactgtagtttaatgttaacaaatggaaccttattgtaaagtgttaccagcaTTTCATTGGGTTTATGGATACATATTGTTATTATCCTTGGTACTGTAGTACCGTAGTAAATTTTGTTCCAAAACTGGTCAGAAGGGTTTAGTATGGAAGTCTGTTTCCACCTCAGAGTTAATAAAAGTCAGaaaattttaagtaataaagccacattgtgagatttaaagcgatataaagtcacaattatgagaaatttgctactttaacatttttgctAAGTTAAAATTTTGATCTGAAGTCACAATTGGGAAGGTATAATGTCGCAAATTACAagataaaatgttacaattgtgagatatgaagatataaaattgtaattgtgcGATATATTGCGACGTCATGAAAAATgatgagaaataaagtcacattgCTACTTATAAGGTCACAACTGCATAGTATTAAGTCACCATGAGATATGAAGGTATAAggtacaattataaaaaaacgtCACAGAGTTACAGATTACAAGTAACAAGGTTACAGTGTGAGATAATAAGCTATACTGTAAGAAATGAAGCTGCAGTTATGAGAAATTGTCACATCGCAATATACTTTTTGCGAGATAATACTGCGAAATGTAACTTTTGAAAAATAGTAACTGTGagaaaaagtattaattatgggatataaagtcacaattatgagaTATTAAGTCACTGAGATAAGTTTCAATTatgcaa

Function

GO:

id name namespace
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0004059 aralkylamine N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27582 lncRNA upstream 89885 9602642 ~ 9603064 (+) True G18470
TU27569 lncRNA upstream 117047 9574881 ~ 9575902 (+) True G18458
TU27568 lncRNA upstream 117047 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 117255 9575241 ~ 9575694 (+) False G18458
TU27566 lncRNA upstream 118460 9574289 ~ 9574489 (+) True G18457
TU27622 lncRNA downstream 77405 9775320 ~ 9784458 (+) True G18502
TU27627 lncRNA downstream 156688 9854603 ~ 9859173 (+) True G18507
TU27641 lncRNA downstream 167871 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA downstream 213042 9910957 ~ 9911612 (+) True G18549
TU27728 lncRNA downstream 336226 10034141 ~ 10103461 (+) False G18574
XM_043235157.1 mRNA upstream 312 9679898 ~ 9692637 (+) True mgrn1b
XM_043235156.1 mRNA upstream 312 9679898 ~ 9692637 (+) False mgrn1b
XM_043235155.1 mRNA upstream 3241 9679898 ~ 9689708 (+) False mgrn1b
XM_043235722.1 mRNA upstream 20145 9667567 ~ 9672804 (+) True LOC122341977
XM_043233746.1 mRNA upstream 26344 9656552 ~ 9666605 (+) True icam3
XM_043235218.1 mRNA downstream 57266 9755181 ~ 9761184 (+) True mpg
XM_043235569.1 mRNA downstream 80577 9778492 ~ 9779290 (+) True hbaa2
XM_043235166.1 mRNA downstream 87367 9785282 ~ 9786123 (+) True LOC122341659
XM_043229144.1 mRNA downstream 91440 9789355 ~ 9790164 (+) True hbbe1.1
XM_043228471.1 mRNA downstream 94741 9792656 ~ 9793389 (+) True hbbe1.2
TU27323 other upstream 507289 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 507368 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 1129573 8260084 ~ 8563376 (+) False LOC122342110
TU27611 other downstream 41881 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 100900 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 327903 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1054844 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 1080891 10778806 ~ 10781853 (+) False kcna7

Expression Profile