RNA id: TU27641


Basic Information

Item Value
RNA id TU27641
length 2109
lncRNA type read_through
GC content 0.31
exon number 3
gene id G18517
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9865786 ~ 9943153 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGCTAGACGTAGATTTATCATTTTTGAGAagactgaatttttaaaatttggtatatatctatttttttatatgtattttaaaatgagttcattcaggtgatgcaaagctgaatttttagcatcattacagtcttcagtgtcacatgatgctttaGAAATATGCTAATTCAGTCTAATATGCTCTGttggtgatttttttatttattttttttttttttttttttttttttttttttattaatcAAAATGTCAGATTTATTTGAACAGATTTATTATAGCTTCATCAGacaacatttagattttatgtAGAAATGACGACGgtaatttttctatttgtacTACACGACTGTAAACATCTGCATCTTTTAATAGAATTGTTAGTGTCTGTATCAATAATACACATCTCAATTAAATACTGACTTAGCCGAATACAGACGGACGGCTTTCTCGACTCGCTGCTGCCCGCGCTGCCTgtccacatttaaaaaaaaaaaaaaaaagtttaaaaggcATCCAAAACAACATGAATTACATTTCTACAATACACTAACATATGGGACACAATATCACGAAAGAATAACACGCCATTAGATTTCCTATGCATGATTTGATTTGTTAACGTCAGTTAAATAACAAACTCGAGTCCAATGCGGCTGGAAACATTTTAGTGTTCACGAACAAAACTTACACGATGAGCATTGCATAATCTGACTACAGCAAGTACGTACTGGGGTTTAAGTGTTTACAAAAGGAAAAGACTGTTAGCTTTAATAAAGCTGAAGGGACATTTACTCTGTCGGCTTGGAGCAATGGGAAGAGGAGAATCACCCCAAACATCATAAACCTTTACAGGCTGTGATAACCATTAATTGAAGATGACTTTGCAGTTGTTATCCGGCGGAACAGTATACCTGTAATGAGAAACACGAGGGGGATCATGTTCACCTCAAGCTTGTGCTTGTCAATGCTTCCTGATGGACGCCTATTGTTtggctttggaaaaaaaatacagatttatggCCTTTCGTTCTCCGCATTGGTTCTGTAAGATTGTAGAAAACATCAGCCCTCACGTAACCACACCAGGTTGTGCTTTAAAAGTTTGTTCTGGATGAAATTATGCTCGCGTTTCGAACGGGAGGCCTCGTGTCAGTCGTGACAATGGTTCTTTATGACACGGCGGAGCGGCCACCTTAATAAAAGGAACTGGCTGATTGCTTGAAGGTTTTCATCTCAACAGGCTTCTTATTAAAATGGGAATAGAGGCTCTACAGTTCTCTGCACTTTCACTTTTTCCAGCTTTCCGTTGACAGTGTTTCAGAATGCAACGAGGCCAATGCTGCTTCCACGATCGGCCTTTCACACATGCTTTTAATTCAGAGAGGACTGTTCAGGTACTCTCTGAATTCAGTCTGCCGTCATGCAAAAATTTCCCATTTAAGACATTTCAAATACAGCCATTTCTCTATAGATACTAAAATAGTTTGATTTTATCTCCACGAACGATATAATCAACCAGACGATAGCTTTGGTGcttatctttttaaattatctttttatGTTGCTTTCCAAATGCTAagggctttttttatttgacaaaaaagggTATACGTAATATTGCGAAATCCTGTCTCTGTGGTCACTATATTGCTGCTTGTAAGACCTTACGGGCCACAAACAAAGTTGTGAGAGATTTATTTGAGTGTCATTTGAGAGGGTTATTTCCTGCAAACTCCTTCAGATCTCCGGTCTGTTCAGTGTCAGTAAAAGATGAGAATATGGTGATGGGGCAATATCTGTCTGCTAAATAAAAAGAGATAGAAAACAGATTTCTATCTTTCTTAATTAGTTATGACAGGAAGAGAGCGAAtgaaacgagagagagagacggtgaCCGATTAATTGTGACAGGCTGGTATAAACCCTTGAGTGGGCTTTGGCCCCTATATGCTCTATAATCAAGGCCAACCTGGCAACCAGAACTCTATTTATGCTCAGCCAGGACGTCGTTCAGGATGTTCAGCAGCTGATGGACGTGGTACTCCTTGAAGACCAAAGCGGGACGGAAACGGATGGTCTTTTCTCCACAGGAACCCATAAACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27627 lncRNA upstream 6613 9854603 ~ 9859173 (+) True G18507
TU27622 lncRNA upstream 81328 9775320 ~ 9784458 (+) True G18502
TU27582 lncRNA upstream 262722 9602642 ~ 9603064 (+) True G18470
TU27569 lncRNA upstream 289884 9574881 ~ 9575902 (+) True G18458
TU27728 lncRNA downstream 90988 10034141 ~ 10103461 (+) False G18574
TU27867 lncRNA downstream 330821 10273974 ~ 10302050 (+) True G18671
TU27964 lncRNA downstream 628666 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 646369 10589522 ~ 10589819 (+) True G18747
TU27977 lncRNA downstream 695936 10639089 ~ 10639293 (+) True G18757
XM_043233844.1 mRNA upstream 2568 9860538 ~ 9863218 (+) True angptl8
XM_043233845.1 mRNA upstream 3246 9860463 ~ 9862540 (+) False angptl8
XM_043230173.1 mRNA upstream 61400 9803573 ~ 9804386 (+) True LOC122332778
XM_043229722.1 mRNA upstream 65990 9799062 ~ 9799796 (+) False hbbe1.3
XM_043228772.1 mRNA upstream 69254 9795789 ~ 9796532 (+) True LOC122331228
XM_043235480.1 mRNA downstream 32219 9975372 ~ 9982638 (+) True LOC122341833
XM_043233707.1 mRNA downstream 299357 10242510 ~ 10296401 (+) True sept12
XM_043233708.1 mRNA downstream 325047 10268200 ~ 10296401 (+) False sept12
XM_043233711.1 mRNA downstream 325078 10268231 ~ 10296401 (+) False sept12
XM_043233710.1 mRNA downstream 328172 10271325 ~ 10296401 (+) False sept12
TU27625 other upstream 66031 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 115906 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 169227 9694632 ~ 9696559 (+) False aanat2
TU27323 other upstream 680126 9184528 ~ 9185660 (+) False LOC122341719
TU27725 other downstream 82665 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 809606 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 835653 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 1219201 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 1390606 11333759 ~ 11335825 (+) True LOC122331261

Expression Profile