RNA id: TU27691



Basic Information


Item Value
RNA id TU27691
length 578
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G18549
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9910957 ~ 9911612 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCATGCGTCGACGGGCGGAGAGCGTGGAGTCTAGAGCTCCGGGTGCACGTGTGGCGAGGGGTCAGCGCCGGCCGGCTCTTGGCACACCGCAGGAGTGGTGAATTCCATCAGGTATTCACAGCGACTCGGCTCCGATGTCGAGGTCACCACAGTCTCCTTCCCACAAGTCAGCTTCACCTATGTAGTTGATCTGTTTGGACCTTGCCAGCACCCGGTGCCGTGCTCGTATTTCATCACCAAGTACTTATTATTTTCAGGCCCTGACCAGCTTCCCCACGTCCTGGGAACACGAGCATCTCTCATTAAATACGCTCAAAAATGTGATGACGAAGTGATATTGAAGAAGAAAGAGGCGTTTTAATGTGGTTTGTTGGTCTTAAAGAGGTTTAAGCTGTTAAGACCAGGTGTTTAGTTGAACGCTATGGATGCtccataataaaataaaaaaagaatgtgatATCACTACATAGCCAATATTAAAAGCTCTATAATgtctaaacaaacatttttatcctTTACTTCTATTTTCTGATATTAACGTGCCTGTGAGTCAGAGACTGTAAATTACAGTGATCCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU27627 lncRNA upstream 51784 9854603 ~ 9859173 (+) True G18507
TU27622 lncRNA upstream 126499 9775320 ~ 9784458 (+) True G18502
TU27582 lncRNA upstream 307893 9602642 ~ 9603064 (+) True G18470
TU27568 lncRNA upstream 335055 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 335263 9575241 ~ 9575694 (+) False G18458
TU27728 lncRNA downstream 122529 10034141 ~ 10103461 (+) False G18574
TU27867 lncRNA downstream 362362 10273974 ~ 10302050 (+) True G18671
TU27964 lncRNA downstream 660207 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 677910 10589522 ~ 10589819 (+) True G18747
TU27977 lncRNA downstream 727477 10639089 ~ 10639293 (+) True G18757
XM_043234889.1 mRNA upstream 2382 9892533 ~ 9908575 (+) True elavl3
XM_043234891.1 mRNA upstream 2382 9892534 ~ 9908575 (+) False elavl3
XM_043234893.1 mRNA upstream 2382 9892534 ~ 9908575 (+) False elavl3
XM_043234890.1 mRNA upstream 2382 9892534 ~ 9908575 (+) False elavl3
XM_043234892.1 mRNA upstream 2382 9892535 ~ 9908575 (+) False elavl3
XM_043235248.1 mRNA downstream 8963 9920575 ~ 9927011 (+) False nat15
XM_043235247.1 mRNA downstream 8964 9920576 ~ 9927011 (+) False nat15
XM_043235249.1 mRNA downstream 9192 9920804 ~ 9927011 (+) True nat15
XM_043235251.1 mRNA downstream 15500 9927112 ~ 9941228 (+) True carhsp1
XM_043235480.1 mRNA downstream 63760 9975372 ~ 9982638 (+) True LOC122341833
TU27625 other upstream 111202 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 161077 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 214398 9694632 ~ 9696559 (+) False aanat2
TU27323 other upstream 725297 9184528 ~ 9185660 (+) False LOC122341719
TU27725 other downstream 114206 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 841147 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 867194 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 1250742 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 1422147 11333759 ~ 11335825 (+) True LOC122331261

Expression Profile