RNA id: TU27867


Basic Information

Item Value
RNA id TU27867
length 4638
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G18671
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10273974 ~ 10302050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttattttttttttTTATTTTGTACAACTTTTACTAAAACGGTGCAGACTGGAACCAACCAACTGAAAACAACAACGCTTGTCTGACAAGGCACTGCAGCCATGAGATGGAGTTCATAaaactttgtcttttttctctttcattttaaattaaccaCTACAACAGTATTTACAGAAAGAAATGTACCCCAAAGAACTGAGAGCTGTGACATGCCTATGTCACACCAGAGAAATAAaataccaaataaatgaaacattttttagataATCAGTGTGAGGCAGATATTTAACATTGCTCATTAGGCTGTTGAACCACAGTCACCCAAACCAAGTGTTTGCACCAGAATAAAAGTCGTTGTTACGGACCCTGTATGAATGTCAAAAGCATTACTAATATTGGTTTAGTATGACATGTACAAGTACATACAAAGAGCCAACAAAAgagttgttttctgttgttgaATCGTTGTTCTCAAATCTTATAAAAGAAACAATCCTGACATATGTTAGTTGGGAAGAGTTAGAGGAACAGATGATTTATTCTATTCGCTTAACAATTAGAAGCGCCAGACATTTAGAGTTAAAAGCAAGCTGGAGGGTGAACAGAAACTGCCAACACACTCTGGATGTGGTAAGCTAGTAAAACCCCTTCAGAGAGCAAGAACAGAGGAGCACTATTCGTGGAAACTGGCCTtgaaaatggtttaaatttacAGTGTAAATCAGACAGAACCACTCCATATCTGCCAGCCAGATTCGTCTGGTAAGAAAGCGAAATTCACACAGTAGTACCAGTATTTCATTGACTCTCATTGAAAAGCAAGCCTGCCTCGATCGCATGAGGAAGCCAGCAGGCGCAACTTCAATGTAGACACACAATAAACATCTGTTAATGTTCTTGCATTTAGCCCGTATTAACGTctttgatattagctcaatgtACAAAGTGAAACAAGCTTAAGTCTTTTATACTATCCATTGCTGATGTTACTCATCGCTAAAAGACCTTTTTGCATATCTTGCCTCTTTCTTGATCAGGTTTCTCCACTGGCTTCGTTGAAAGCGGTATGGACGCGTGCGCTTAGAGCCAGGCAGCCTCAAAATCGCTGAAACCTTCTGACAGATGACCCTCGACATATTGATAGATATTTACAGATTACAGCGGGGTTAGTGCATgagttattatatttatatttagggtTCTATTAGGTGAAAAAGTTCCCACACACATAAACTCTCATTCTATACAAAGAGGGAAAAGGCTCGGTTTGGAAGTGAAAACGATAGTATTTATACAAGATTAATACAATATCTCCGACAGTTTCATACAGTTGTCCTCAAATACTATGCAATGCCTTAGCGATATATTAATAATCTCTCTTTATTTCATTCATCTCAAATGGTCGTTTCTATTATGGAGACATACGAAGTGAAAAGCGCTTTGATGGGATTTCCTTCAGATCTTTGCTAGTGAATAAAACCTGTCGCATTCTTTGTAAGACTATCAAATGAGTGTAAATACTGCAATATGTCTTCTAAGTTCGAGCGCAGGCATATGAACTGTTGCAGAATATTTAACATCCAATTATGGACACAATGTTGATTCACTATTAGGCTACTAGACTTCATGACAGCGTCTCTCAACTTACACCCAAACTCTCAACTTtacaaccaaaaacaaaagaggtGAACTAGAACAGTCGTTGAACACAAGAAAATGGCCAGCAGTAGGGTTAGAAAAGTTAGGTCATTGTCAGCGTCTTcccgccaaaaaaaaaaaaacatcctcagAGACCGCGCTTATTCTAACCGTCAAAACCATGGTCATCTGAATAAAGCTCAACTCCAATCTCCATAGTAGACCCCATCAAAATAACATGTTCTACTCCTAAATAAAACTCCTCGCaaaggtaataaataaataaataaatatgtgcgTTGTGTCAATAAATTAACCCGCTACCAATGATaagtaaaagcaaataaatacgTAACAACTTCAATGATTCAAAAGATAAAGTCACACAAGGTAGCGAGATTAAAAGTCTCTGGGGATCTCGCCTGGATAAGCGGCAGCCGCTAACCCTGATTAGCTGTGACCCCCCCCATTAAACAGGTCACTATTTACAAGAAGAGAGATCGACTGTCTGAGGTGAGTGCTAATGTTTATGCTAATGTGTTATCTTTAAAGCCTGGTGAATTTAAAGTGGGATAGTGTAGCATCCACTTAAAGACTGTGATGTTGGAATTATCCCGACATATTTTCCATCTGTTTTGTTCtacacttttttaatgtttgaatcTAAGAGGTTTATAATAGCTGGAGAAAGCTAGAACTGTCATTCATCTCAACTGTACACAAAATAAAGGTTCCTTACTGGCAAAATGGTTGTTAAAAAGAACTGTTCACCGCAAGATTCTTTGGAAAACTGAATATGGTTCTTCAGTGCCATCACTCTAcgaacatttgcatttaaaagataGCTATTGAGTCAAAATATGTCGTTAATTTGGATGGCTGCTTTTTGCATCCAGATGATGAAGTTCAGGCATGTACCAGCAGGGGCGCTAACCAGCCGTGGTTTGAGTTTAACAGCATGCCTAAAATTCGAATAGTactttactgaagaaaaaggTACCACATTGCATGCGCTACTACCATATCTGTTGAAAGATGATGAAAATACTCATAGGTTAACACACTTCACCAGCTACAACGTAGGGGtggcttttaaataaatgattggcCAATCTAAGACTCCAAAATTTTTCACCATGCCATTTCTTCTGCTACTTTATATGTTTGAGTAGGTGAACATTAAGGTCATCGACATCACATCAAACCCATCTGAGATGATCTGAGCAGCACGTTAATCTCCTGAGAGGACAAATGCAGGGTTTGATACGGGGTATGGGATACGGAGTGggctggaaaacaaaaaaatggctgGTTTCTGCGAATCCCCCTGCGGACCTGTATTCTAACATACCCCATGGTAAAATGAGGTAGGCACCACAGATGAGCACAACTCTGAGGAGCGAAGAACCCGGGCACCTCTGAAAATAAAAGGCGCTGCTAATCTAAAAGCAGACATGTGGGTATTGCTTAACAGGAAAGCAAAACTGCTAGATGAAGAGAGACTACTGTAATATGCTTGTGTGGGATGTCTGTGATCACTTTAATTACACTGGCCTGCCTCTGCATTTGATGCAAATCACTGTAAACCGTATTCATCAGATGTATTTAAAAGCACTCAGGCTGAAAGAGACACTGTAAGAAACTATGGTAGAACCGCCATGCTGTACGCTGCTGTCATGTTTTGGCCTGGTGACAAGTAAGCAATGACGTGCAGTTTCAGTCTATGAAAGGCTGTCACGTGGCCCAGGTGCATTATGGGATCGCATCTTCATTTGAATCAGGATTAATATGGAAACCTGCACATGAGCCACTAATATCAATCGACATCAAAatggaattaaaataaaacaggcagATGAAAAAGCCAAGCTATCTTTTGTACAAACCACAGTCCCtttgaattatattaaaatgttatgagCAGTTCCGATCCGCCCCGCTCTCCCCGACTCGAAATATCTGGAAATGTCTTTAAAAGAGCAATCTGCTGGGAAAAATAACCTCCTGACTTCTGATTATGCTGGTTCCTTTCAAAGGACAGTACCTCTTAATACTGTACCTTCACCGTACCTGGATTTCCATCTTATTCAAAGTGTCCGAAACCTCGAACTCATACCATAAATGTTTCACAGTAATCCTTATCAtcaaaaataatacttaaaaaaataataatatttaaaaacaaaaaagaccaAAAGAGAACTGCATGACAAAAAGCAAGTAGCGTTGACGTGAAAATCTGCGTAGCTGTTCATCTCTAaagttctctttcttttttcccttgaTAAGACACAGAGATGGAGCGGCAGCACCACTGAGGGGAGCGAGAGACCCGGATGACGCCGGACAAAAGCGAAGAGACCCTGTTGCAGTGGCTCCTTAACCTCGTTCTTTCCCTTAAACATTTCGGTTCCTCTCTACCTTTCCCTGGATATGAGAGACAGCTCAAACAGGCAGCGCACACCTTTGTCACTTCAAGATAAACAGTTTTGGATGAGACGTGGAAGCTAGTCTCACAGTTCAGTGGAGGATCATGTTTCATGTATGTGTGGGGGCTGATTCCTATGTGTCATGTTATTTAATGAAAGATCTAGCCTCTGACCCACTGCGCTTTGTACATTTTCCCTCTCGCTCTTCAGTCCAGGCCCGTTCCGACCTTTTCTTTCAGATTTCCCTTTTTGTCTTCCATGTCAGTGATCCCTCTTCACCCctccagaaaaaaaaccttccatTCACTTTCTCTCGTTGATTCTTCCTGTGGGTCCAGGATGAAGTTGGGTTTATCATCAGTCTGTAGGAGGAGGTTTTGGTGATGTGGTGGGTGCTGGTGCCCATGAAACTCTTTGCTCTACTCGATGACCATGCAGCGCGGCAGATGCTGGGAGTAGTATTTGAAGAGTTCGGCTGTGGCGCCCGGGCAGTTGGTTAGTTCCAGCTCCTCTAGCTCCTGCAGTTGGATCAGGCCTGATAGGCCAGTAGTGGTCAGCAGAGGGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27728 lncRNA upstream 170513 10034141 ~ 10103461 (+) False G18574
TU27641 lncRNA upstream 330821 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA upstream 362362 9910957 ~ 9911612 (+) True G18549
TU27627 lncRNA upstream 414801 9854603 ~ 9859173 (+) True G18507
TU27622 lncRNA upstream 489516 9775320 ~ 9784458 (+) True G18502
TU27964 lncRNA downstream 269769 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 287472 10589522 ~ 10589819 (+) True G18747
TU27977 lncRNA downstream 337039 10639089 ~ 10639293 (+) True G18757
TU27983 lncRNA downstream 361196 10663246 ~ 10664532 (+) True G18763
TU28016 lncRNA downstream 389840 10691890 ~ 10693750 (+) False LOC122333995
XM_043235480.1 mRNA upstream 291336 9975372 ~ 9982638 (+) True LOC122341833
XM_043235251.1 mRNA upstream 332746 9927112 ~ 9941228 (+) True carhsp1
XM_043235248.1 mRNA upstream 346963 9920575 ~ 9927011 (+) False nat15
XM_043235937.1 mRNA downstream 72052 10374102 ~ 10385643 (+) True flr
XM_043235938.1 mRNA downstream 72052 10374102 ~ 10385641 (+) False flr
XM_043235302.1 mRNA downstream 88460 10390510 ~ 10394344 (+) True alg1
XM_043235304.1 mRNA downstream 95793 10397843 ~ 10401045 (+) True LOC122341728
XM_043235654.1 mRNA downstream 120696 10422746 ~ 10571227 (+) True cacna1ia
TU27725 other upstream 239507 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 474219 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 524094 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 577415 9694632 ~ 9696559 (+) False aanat2
TU27323 other upstream 1088314 9184528 ~ 9185660 (+) False LOC122341719
TU28036 other downstream 450709 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 476756 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 860304 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 1031709 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 1066843 11368893 ~ 11369752 (+) True G18949

Expression Profile