RNA id: TU28016


Basic Information

Item Value
RNA id TU28016
length 1720
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC122333995
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10691890 ~ 10698540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACCATATCCTCATATGACAGGAAAAGTATGTTGTACTGGTCTCCTTCACTGTGCCACTCTTGGATATGATCAAACCAAGATGAACCGCCAACTGAAACATGAGGAATGAATTGATAAATCTGTTAAAAAGTGACACttactatacaaaaaaaaaggttctttaccaTTTCCTGTCAGATACTGCTCCAGAAAGTTTTCAAAGCTCTTGTATTTCTCAAGCTTGGCCCAGACTTTGCTGAAGTGATAATATGACACGGCGTTGTCTTTTGGATTTCTGACCACATACACGAtCTTTCCTTTCTTCCCCCTAAGGCCTGGTGGCATCAGTCTGGGTGTGAGATGGGTGGCAAAGAACCGTGGAGACGATCGCAAAGAGTAGTCCGCTCGGCCTTCACGGTACTCTAACCAAGGCATCTTCTCAAGATTGTTGGGAAATTGAGTTTTGTCTGTGGCATCCtcacaaattaaatttattatgttCTGTGTCCATATTGTGCCTGAAGAATGTAGTTCAGCATGTTTCAGCAgaagaaatcacacacacacatacatacaccaGTTGTTACAGGTGGTGTTTGCTATTAGTCCAGCATCTATCTTTAAGTCAAAGTCTTTTTATCTATAGACCTTACTCCTGAAAAATTTATGAGCGGTCTCCATAGAAACTATGGCCAATCTGTGGCCAAATAGTGGTCATCTGTTTTTAACGTAGCTAATGTCTTCTACACACTCACACGTCTTGATTTTACTGAGTTCAGCATGTTCTTAGGTTAACACATTTTAGCCTTACCCCTCAAAACCGCAAGTCATTAGTTCATTTTATAAGTCATTACAGAAAATGCAAAATGGTTGGTCTAGTTGTCATAAACTGTCAGGCATAATTTACATTAGAATTTCTATAActttgaatgaatttaaatcaATCTTGACTAATGAAGAGAATATATATCAACCAATGACAAACCAGTTCTCTCAAATAGCTCATCTCCTGAACCTTTCAATTGGAAAGCATATATAGAGGACAACACAAGAGTTACAAATTCTGAATAAGAATAATTATCTTTGTTGTTGCTTGTTGaacaacagctgaaaactcacctctttcagcaatacttgacctcatcttaaaaaaaaaaaaaaaaaaaaaattattctcacTTCTccttccccttgtttattccttccctttctggtttgtactaatttgaacactgcctgtgactgggtgttacaagcacttactctgtctgtttgtctctcaaaaaatgaatcgctgttgtactctcaattgtaagtcgctttggataaaagcgtctgcaaaatgactaaatgtaaatataaatgttgttaAACTGTAATGCAATCTGTAGTCTTTGCTCCTCTTTGGTAAAACTCTGTATAATACATTGATTTATgtcaagaaaaacacatttctgaatGGAAAGGTTGCAACAATTCTTAATCGTACCTGATTTGGGATATGTCACCAGAAAAACATCACTGTCACGAATCTCAAAATGCTGAAGAGAGTCGATGTACTCCGCAGTGGTTTCACCTTTTGCAAAAACATAGCCCTTATATTTACTTAGATAGTTGTTAAGTGTTTCCATTATGCCGTTTTACTTCTTTCCACCTGCAATGTGGAGAAAATGGGAAGATGACCTTTGGAATCAGcgtgaaagctgaattttgttTCTACATCCCAGAGTGgatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27983 lncRNA upstream 27358 10663246 ~ 10664532 (+) True G18763
TU27977 lncRNA upstream 52597 10639089 ~ 10639293 (+) True G18757
TU27967 lncRNA upstream 102071 10589522 ~ 10589819 (+) True G18747
TU27964 lncRNA upstream 112746 10571819 ~ 10579144 (+) True G18744
TU27867 lncRNA upstream 389840 10273974 ~ 10302050 (+) True G18671
TU28021 lncRNA downstream 6527 10700277 ~ 10700619 (+) True G18792
TU28018 lncRNA downstream 7037 10700787 ~ 10701373 (+) False G18790
TU28019 lncRNA downstream 7037 10700787 ~ 10701636 (+) True G18790
TU28023 lncRNA downstream 8544 10702294 ~ 10702806 (+) True G18794
TU28035 lncRNA downstream 85056 10778806 ~ 10842506 (+) True kcna7
XM_043235903.1 mRNA upstream 13209 10672523 ~ 10678681 (+) True eif3d
XM_043228158.1 mRNA upstream 30806 10645904 ~ 10661084 (+) True sstr3
XM_043235677.1 mRNA upstream 53294 10626162 ~ 10638596 (+) True rac2
XM_043234869.1 mRNA upstream 74309 10607636 ~ 10617581 (+) True fam83fa
XM_043234873.1 mRNA upstream 84381 10595644 ~ 10607509 (+) True grap2a
XM_043225671.1 mRNA downstream 17577 10711327 ~ 10769397 (+) True cacng2a
XM_043233860.1 mRNA downstream 123980 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA downstream 124145 10817895 ~ 10820947 (+) False ifi35
XM_043229804.1 mRNA downstream 140837 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA downstream 141982 10835732 ~ 10842507 (+) False kcna7
TU27725 other upstream 657423 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 892135 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 942010 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 995331 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1506309 9184528 ~ 9185581 (+) False LOC122341719
TU28036 other downstream 59009 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 85056 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 468604 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 640009 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 675143 11368893 ~ 11369752 (+) True G18949

Expression Profile