RNA id: TU28019



Basic Information


Item Value
RNA id TU28019
length 850
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G18790
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10700787 ~ 10701636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTTCTCCATCTTCTCACAGATTTGTTCAGTGATACGTATGTATTTGTCTAGTTGAAAGGCCAGGACATCCAGATTATTGAgtgaaggaaggaagaaagttTCTGCATTTCGTTTAAAGTGGATGAGGAGAGGAGAAGCCATTCTGGCAGCTGTGATGACTGAACGCACACTTTCAGGACTCGCTTCTTTTGGCAAGAAGCTCTGTCCAATGAAGACAAAGAGGGAGGTCACTGTGAGCTTCTCCATTGCATCCAGAAAGTGATCAAGTTTCTCCAGCCCCTCAAGCGTGTCCTTCAGGACGGCGCCCAGTTCCTTCTCCAACTCCAGGTATCTGGAGTCAGCTGTGACTTGAGTTAAACCACTCCACAGGTATTCCCCAAACGCCTTGGCTTTGTTCTCGGAGCGCTTAACATGGTCAAACTTAAGGCTGACCTGGTCAACTCTGTCCTTGATGTCTCTCATGTTATccagctctgtctctctctgaagggaccatttttgttgtttgtcacAGAACTCCCTCACTGTTGAAATGCAGATAAGCGTGTCTTCTACATACTCTGACAGGAGCTCCTGTAGCTGTTCCCTaagtcaaaacaaaatcaaaacagagAAAATTAGTTAGTAACAATGATATTTCTTATCGGAATTAATAtgattcatgcattttaaaacagttctgGAATAACAGCTTAAACTACTAAGTAGGTCATCTTTAGCTGACACATAATTCTGTAGCTCCTTCTAAGATAATATCTAGGTTAAGTTCTTGACTACAGTTTTTTTGTGGGGTGTTCAGTTTCATAATTGGGTTTTGTTCTTACACGCTCAGAGGCATATTTGGCAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28021 lncRNA upstream 168 10700277 ~ 10700619 (+) True G18792
TU28016 lncRNA upstream 7037 10691890 ~ 10693750 (+) False LOC122333995
TU27983 lncRNA upstream 36255 10663246 ~ 10664532 (+) True G18763
TU27977 lncRNA upstream 61494 10639089 ~ 10639293 (+) True G18757
TU27967 lncRNA upstream 110968 10589522 ~ 10589819 (+) True G18747
TU28023 lncRNA downstream 658 10702294 ~ 10702806 (+) True G18794
TU28035 lncRNA downstream 77170 10778806 ~ 10842506 (+) True kcna7
TU28048 lncRNA downstream 85719 10787355 ~ 10789666 (+) False G18807
TU28045 lncRNA downstream 85980 10787616 ~ 10789666 (+) True G18807
TU28062 lncRNA downstream 110188 10811824 ~ 10812786 (+) False G18817
XM_043231867.1 mRNA upstream 2247 10693698 ~ 10698540 (+) True LOC122333995
XM_043235903.1 mRNA upstream 22106 10672523 ~ 10678681 (+) True eif3d
XM_043228158.1 mRNA upstream 39703 10645904 ~ 10661084 (+) True sstr3
XM_043235677.1 mRNA upstream 62191 10626162 ~ 10638596 (+) True rac2
XM_043234869.1 mRNA upstream 83206 10607636 ~ 10617581 (+) True fam83fa
XM_043225671.1 mRNA downstream 9691 10711327 ~ 10769397 (+) True cacng2a
XM_043233860.1 mRNA downstream 116094 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA downstream 116259 10817895 ~ 10820947 (+) False ifi35
XM_043229804.1 mRNA downstream 132951 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA downstream 134096 10835732 ~ 10842507 (+) False kcna7
TU27725 other upstream 666320 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 901032 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 950907 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 1004228 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1515206 9184528 ~ 9185581 (+) False LOC122341719
TU28036 other downstream 51123 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 77170 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 460718 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 632123 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 667257 11368893 ~ 11369752 (+) True G18949

Expression Profile