RNA id: TU28035


Basic Information

Item Value
RNA id TU28035
length 2678
lncRNA type read_through
GC content 0.44
exon number 7
gene id kcna7
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10752759 ~ 10842507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCATTAGCTGCTCAACTTGTGGATCAAGTCTTAAACCACAACACAGGAGATGAACAAAGGTTGATAACCACTACAATAAAAATCAAGAACTCAAATCCGGAGACCGTTCAATGTcgatttttattaaacaactCTGCAGTACTGCATAACACCCAACAGAGCAGAATAAAATTATGACAGCTCCTCCTTGGCAAGGCGGTCTTTCTTGAGGGGTCCCTGTTAACACAAGAAAAGATTGGTTACCAGCTGATTCAGCTCCTACCTTTGTGTATATCAGTTTAACTGATTTCACAAGTGTCATCAGAGAGTGAACAGGGAGAAAGCACAAGAGGGGTACCACTCCCCTGCCTCACTGAGCTTTACTCTTGCACTGGAATGGAACCCAAATCTCAGATGGACAGGCTGAAACAGGTTACGATCAGTGCACTGATCCGAGGGGGGCCAAGGGCATGGATGTGGTACAAAGTTAAGGGTAGAACCCACAATGCCTTGGGGCAGCTCAACTCATGGTGACCTCTTGGGGCCCCTAGTCTAATTTTGGGTCCTCAAATTATAAACTTTATGACCACTGCAGTCATGCCCTCACCATGAAGCTTTTCTTTTCCTCGACGGTCTGGAAACGTCCATGACCAAACTTGGAGGTGGTGTCGATGAATTTGAGGTCGATCTTCTCCAGAGCACGGCGGCTGGTCTGGACCAGGAGAGACTTGCGCAAGGTCAAAACCCTCTTTTTCGTTCCAACCACACAGCCTTTCAGCATCAGGAAGTCATTGGTCACCTCACCATAATGCACAAACCCACCCGGGGGTTGATGCTCTTGTTGGACAGATCATAATCCGTAGAAGCATTGTTCTTAACTACTTTTCCATCCTTGGTGTGATAGCCTACACCAAGCTTGTAGATCTAAGAAGAACAAAACCTTGTAAGAAACTATACTTGATCCTACAGGAAAGCCTGGGTGTAATTCTGAGGTCTCACCTTCTTGTTGATCTCAGTGCGGTGATGGTAGCCTTTCTGACCGGCACGAGCCACAGAGAAAGCCACACGGGCAGGATGCCAGGCTCCAATACAGGCCACCTTACGCAGACCACGATGGGTCTTACGGGGCAGCTTCTTTGTGTGCCAGCGGCTTGTCACACCTTGTATCCATGACCCTTGGTAACACCAATAACGTCAATCATCTCGTCCTGGCCGAAGACTGTGGCAATAGGAATAGGCTGCTCAAGCTTCTCTCTAGCCCAGTCAACCTTATCGGCAATGGAGCCTCCATTCAGCTGAATCTCCATCAAGTGAGACTTCTTCTGTCGGAGGGGCAGCAGGCGCCTGTGTGTGAGCAATGATGCGAATGACCTGGCAGTACTTCTTCATGGTGGCAAAGTCTTTCTCCAGCTGCTTCTTGCCCTCTTCATCTTGCCACCTCTTGCAGTACTTGGTAAAGGCCTTCTTATAGAAGCGACGCTTGCACTCATCACTAATGTGCTCAGCAAAGATGGTCTTGATGGAGCGCAGGCCACGAGGGGTCATAACGTATCCAATAACACCCACTACAATCATGGGAGGAGCCTCCACAATAGTCACTGCCTCGACCACCTCTTTTTTGTTGACCTTGAGCCGGGTCTGTCGACCTCACGGACAATGTGGGTCATGCCAGCCTTGTAGCCAAGGAAAGCAGTCAGGTGAACAGGCTTGCTGGGATCATCTTTAGGGAAACTCTTCACCTTGCCACGATGGCGTTTGCACCTCTTGCGGGGCAGGAAGCCCAGAGAGCCGTGGCAAGGTGAAGAAGGCGAGGAAGGGCCTGGGGAACAGGGAGACCGCGTTCCTCTCGAAGGAGGCACGGCCTACAGGGGGATCTGCGCCCCTCTTAACGGGACTCTCCTGGCTGGGCTTTGCGCAGGACAGACAGGAGTGCAAAGTGTAGGGAGCGTTTACCCATTGGTCACCCAAGTCTGAGAGACTGGAGATCAAGTAGAGATGAAAGAACGAGAGATGGAGGCTGTCCTGTACCGTGTTTTAAGGTGCACTGCCTCACTGTGACTCACTAAGCATATGTGGATGACAAGAGGGAATAAATGCAAGAAGCAGAAAGAGATGGTACAAAATGCAGATGCAATATCCAAAGGAATATGACTTTCTATCTTTAACACATCTTTAAACCGCTTTCCTGATGTTTTCCGGAACTTTTTTTGGCATCTCACTGAGCTTTAAATcactgaatgtatttatttgagaaGCTGTCCAGAGTGCGGCATCTCAGCGCGTTCGGAAAAATAGATGAGGATGAGCCGAGCTGTGTTGTGCAATAAAAGCGTTTGCACCTTTGCTTTAAAGATCTTACTGAAATGTTGACGTAATATCGGACTCATTCGTAGGAAGAAGTGCCATGCGgtgtcatttaaatgtcatgtgtTTTGTCACCCGTGCTGCAGCCATGAATGTGCCAGGGATTTGTGTGTGCCGATGAATGGATAAAGTCTTAAGCATCATTCATCCGGAACAGTTTTGTGTTACTGCTGTTCGGACATTGTTCAAATGCTGTGAATGatagatgtgtttgtgtgtttgcgtgcTCAAAGGCTTTTTAGGAGAATATGTGCAGTAATATACGACGTGTGAACTGTGTAACGCTGAGCCATGTTTGtgtactatttattaaaatttttaatcaCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28023 lncRNA upstream 76000 10702294 ~ 10702806 (+) True G18794
TU28019 lncRNA upstream 77170 10700787 ~ 10701636 (+) True G18790
TU28018 lncRNA upstream 77433 10700787 ~ 10701373 (+) False G18790
TU28021 lncRNA upstream 78187 10700277 ~ 10700619 (+) True G18792
TU28016 lncRNA upstream 85056 10691890 ~ 10693750 (+) False LOC122333995
TU28101 lncRNA downstream 77854 10920360 ~ 10920871 (+) True G18847
TU28072 lncRNA downstream 89865 10932371 ~ 10970464 (+) True G18824
XR_006248664.1 lncRNA downstream 169703 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 178822 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 234538 11077044 ~ 11078732 (+) True G18894
XM_043225671.1 mRNA upstream 9409 10711327 ~ 10769397 (+) True cacng2a
XM_043231867.1 mRNA upstream 80266 10693698 ~ 10698540 (+) True LOC122333995
XM_043235903.1 mRNA upstream 100125 10672523 ~ 10678681 (+) True eif3d
XM_043228158.1 mRNA upstream 117722 10645904 ~ 10661084 (+) True sstr3
XM_043235677.1 mRNA upstream 140210 10626162 ~ 10638596 (+) True rac2
XM_043235139.1 mRNA downstream 31731 10874237 ~ 10885623 (+) True LOC122341641
XM_043233932.1 mRNA downstream 106172 10948678 ~ 10954729 (+) True akt1s1
XM_043231371.1 mRNA downstream 135643 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA downstream 135643 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA downstream 135643 10978149 ~ 11006634 (+) False mybpc2a
TU27725 other upstream 744339 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 979051 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1028926 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 1082247 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1593225 9184528 ~ 9185581 (+) False LOC122341719
XR_006250543.1 other downstream 319848 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 491253 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 526387 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 930695 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 930695 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile