RNA id: XM_043229794.1


Basic Information

Item Value
RNA id XM_043229794.1
length 2573
RNA type mRNA
GC content 0.52
exon number 3
gene id kcna7
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10752759 ~ 10842507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAGTATCTGTACTGCACTGACCAAGGAGAGGACAAAGTTTGTGGGTTCAGGGTACAGGAGAAAACACCTCCTGTTGGACTCACAGGGTAAAGCGTCTGGCAGAAAGAGGGGACAGTAGATACACAGCTCATGGTGTGGTCCAGGTAGAGAAGAAACACGGATAGTGTGGGGTAACTATTCTGGATTTACGAAAACTAGTGGCAGAGGACTGAGCGCacaagaaagaagaagaagaagagatggacaaaggaggaggaggagaatcGGATGGGGGAACGGAGGTCAAAAAACAAGCAGAGGAAGAGATCAGCGAAAGCGACAAGAAGCTCAAGGACCAGCGAAACAAAGCAGAAAAGGGTGACAAAGAGAAGGgtgaaaggaagagagagaatcGCAGATCCGGCTCAATGTGGAGAGGAGGCTGGGCACTGTCCGAACGACTGGCCATCAACGTGTCAGGCATGCGCTACGAGACACAGATTCGAACCCTGGCCCAGTTCCCCGACTCTCTGCTCGGAGACCCTCAGCGCCGCCTGCGCTACTTCGACCCTCTCCGCAACGAGATCTTCCTGGACCGCAATCGATTCTGCTTCGATGCCATCCTGTACTTCTATCAGTCCGGGGGGCGGCTGCGGCGGCCTGCCAATGTGCCTCTGGATGTCTTCATGGATGAACTGCGCTTTTATGAGCTGGGAGAGGATATCATGGCTCGCTTCAAAGAGGACGAGGGCTTCCCCAAGGAGGAGCCTCGACCCCTGCCAGACAACGAGATCCAGCGCAAGCTGTGGATGCTCTTTGAGCACCCCGAGTCCTCCGGGGGAGCCCGCATCATCGCCATCATCAGCGTGATGGTGATCGTGGTCTCTATCCTCATCTTCTGTTTGGAGACGCTGCCTGACTTCAGAGTGGAGAAGGAGCAGAGAGAGCAAATGGCATACCAGGCTTTTCTTGCCGGAAACAACACCTCGCACATCCCGACGTCCTCTCCCTTTCAGGATCCATTCTTCCTGGTGGAGACCATGTGCATCTGCTGGTTCTCGTTTGAGCTGGTGATGCGGTTCACCTGCTCTCCCAGCAAGATGTCCTTCTTCAAGGACGTGATGAACATCATAGACTTCTTCGCCATTATTCCCTACTTCGTAACGCTTGGCACAGAGCTGGCCAAGTCCAAGGGCGCGACGCCATCTATGTCCCTGGCGATCGTCAGGGTCATCCGCCTGGTTCGAGTCTTCAGGATCTTCAAGCTGTCTCGCCACTCCAAGGGTCTCCAGATCCTGGGCCAGACGCTGAAGGCCAGCTTGAGGGAGCTGGCGCTGCTCatcttctttctcttcattgGAGTCATCCTGTTCTCCTCAGCCGTGTACTTTGCCGAGGTGGACAACCCGGAAACGGCATTTACCAGCATCCCGGAAGCCTTCTGGTGGGCTGTGGTCTCTATGACGACGGTGGGGTACGGCGACATGTACCCGGTGACGGTGGGCGGGAAGCTGGTGGGCTCCATGTGCGCCATCGCCGGCGTGCTCACTATCTCGCTCCCCGTACCCGTCATCGTTTCCAACTTCAGCTACTTCTACCACCGCGAAATGGAGTGTGAGGACAACCAGGAATACACACACGTCAGCACCTCCCTCTGGGAGGAGGAAGAAGGTGGGGAAGGTGGGGAAGAAGGTGAAGAAGGCGAGGAAGGGCCTGGGGAACAGGGAGACCGCGTTCCTCTCGAAGGAGGCACGGCCTACAGGGGGATCTGCGCCCCTCTTAACGGGACTCTCCTGGCTGGGCTTTGCGCAGGACAGACAGGAGTGCAAAGTGTAGGGAGCGTTTACCCATTGGTCACCCAAGTCTGAGAGACTGGAGATCAAGTAGAGATGAAAGAACGAGAGATGGAGGCTGTCCTGTACCGTGTTTTAAGGTGCACTGCCTCACTGTGACTCACTAAGCATATGTGGATGACAAGAGGGAATAAATGCAAGAAGCAGAAAGAGATGGTACAAAATGCAGATGCAATATCCAAAGGAATATGACTTTCTATCTTTAACACATCTTTAAACCGCTTTCCTGATGTTTTCCGGAACTTTTTTTGGCATCTCACTGAGCTTTAAATcactgaatgtatttatttgagaaGCTGTCCAGAGTGCGGCATCTCAGCGCGTTCGGAAAAATAGATGAGGATGAGCCGAGCTGTGTTGTGCAATAAAAGCGTTTGCACCTTTGCTTTAAAGATCTTACTGAAATGTTGACGTAATATCGGACTCATTCGTAGGAAGAAGTGCCATGCGgtgtcatttaaatgtcatgtgtTTTGTCACCCGTGCTGCAGCCATGAATGTGCCAGGGATTTGTGTGTGCCGATGAATGGATAAAGTCTTAAGCATCATTCATCCGGAACAGTTTTGTGTTACTGCTGTTCGGACATTGTTCAAATGCTGTGAATGatagatgtgtttgtgtgtttgcgtgcTCAAAGGCTTTTTAGGAGAATATGTGCAGTAATATACGACGTGTGAACTGTGTAACGCTGAGCCATGTTTGtgtactatttattaaaatttttaatcaCACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28076 lncRNA upstream 6897 10827078 ~ 10828835 (+) True G18828
TU28062 lncRNA upstream 22946 10811824 ~ 10812786 (+) False G18817
TU28064 lncRNA upstream 22946 10811824 ~ 10812786 (+) True G18817
TU28048 lncRNA upstream 46066 10787355 ~ 10789666 (+) False G18807
TU28045 lncRNA upstream 46066 10787616 ~ 10789666 (+) True G18807
TU28101 lncRNA downstream 77853 10920360 ~ 10920871 (+) True G18847
TU28072 lncRNA downstream 89864 10932371 ~ 10970464 (+) True G18824
XR_006248664.1 lncRNA downstream 169702 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 178821 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 234537 11077044 ~ 11078732 (+) True G18894
XM_043233860.1 mRNA upstream 14785 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA upstream 14785 10817895 ~ 10820947 (+) False ifi35
XM_043225671.1 mRNA upstream 66335 10711327 ~ 10769397 (+) True cacng2a
XM_043231867.1 mRNA upstream 137192 10693698 ~ 10698540 (+) True LOC122333995
XM_043235903.1 mRNA upstream 157051 10672523 ~ 10678681 (+) True eif3d
XM_043235139.1 mRNA downstream 31730 10874237 ~ 10885623 (+) True LOC122341641
XM_043233932.1 mRNA downstream 106171 10948678 ~ 10954729 (+) True akt1s1
XM_043231371.1 mRNA downstream 135642 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA downstream 135642 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA downstream 135642 10978149 ~ 11006634 (+) False mybpc2a
TU28036 other upstream 53879 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 53879 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 801265 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1035977 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1085852 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 319847 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 491252 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 526386 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 930694 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 930694 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile