RNA id: TU28072


Basic Information

Item Value
RNA id TU28072
length 323
lncRNA type sense_over
GC content 0.54
exon number 2
gene id G18824
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10932371 ~ 10970464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttAACGgtcatcaaattattttattaaatcagtaGTAAAAACGTAATCCAACAATACAGTTATAAGTTAAGTTTTTCGATCATTATCTCTTTAGaaggatctttttttttgtaagtgtatGTATCATTATGCCAGTCAATGAACTCAAAATCcgctttaaattattattatgtacaaCACAGGAGTTTGTTGCCATGGGAATCATCGTCCTCCGCCATTGGCTGCCCCACCTCCGGCGCCGCCCCCAGACTGATCCTGAGCTCCAGACATCATCAGGAAAAGAACGAGAGGGACAATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28101 lncRNA upstream 11500 10920360 ~ 10920871 (+) True G18847
TU28035 lncRNA upstream 89865 10778806 ~ 10842506 (+) True kcna7
TU28076 lncRNA upstream 103536 10827078 ~ 10828835 (+) True G18828
TU28062 lncRNA upstream 119585 10811824 ~ 10812786 (+) False G18817
TU28064 lncRNA upstream 119585 10811824 ~ 10812786 (+) True G18817
XR_006248664.1 lncRNA downstream 41745 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 50864 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 106580 11077044 ~ 11078732 (+) True G18894
TU28177 lncRNA downstream 138284 11108748 ~ 11110425 (+) True G18903
XR_006249203.1 lncRNA downstream 191414 11161878 ~ 11162645 (+) False LOC122336295
XM_043235139.1 mRNA upstream 46748 10874237 ~ 10885623 (+) True LOC122341641
XM_043229804.1 mRNA upstream 89864 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA upstream 89864 10835732 ~ 10842507 (+) False kcna7
XM_043233860.1 mRNA upstream 111424 10817730 ~ 10820947 (+) True ifi35
XM_043231371.1 mRNA downstream 7685 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA downstream 7685 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA downstream 7685 10978149 ~ 11006634 (+) False mybpc2a
XM_043235291.1 mRNA downstream 308273 11278737 ~ 11281741 (+) True cldni
XM_043235878.1 mRNA downstream 334861 11305325 ~ 11308557 (+) True prf1.9
TU28036 other upstream 150518 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 150518 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 897904 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1132616 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1182491 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 191890 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 363295 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 398429 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 802737 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 802737 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile