RNA id: TU28076


Basic Information

Item Value
RNA id TU28076
length 1659
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G18828
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10827078 ~ 10828835 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGACAGCTCCTCTCTGTGCTCCGGTACATGCGCTCCATATTCAGCATAGGCCTGAAGAGACGGATATGGTTATCTACTCCTCGGAAAGCCTTCATGCCCTCAAATAGCTGAGaagaaaacatcataaaataaaaaataaataaatatgaatgaataaatataaaggaaagatagatttttttttttgtagccttAAACATTAGTAAAGCCCTACAGTTCAAAATGGATCATAACCTATATTAAGACAAGGTCAAATAACTGCAGAACATTCATGGGAATACATACTGCAGAAGTACAAATACTCAGCCTCGACAAGCTTACCAAAGCAGTTTGTGAAACAAAATGcagcaaatatattatattcataatacatttaaacagaaatattactgcattttctaatttaatgcattttacaatgttacatGATCTTATAATGGCAGTCATTgctcaagtcttcagtgtcacatgatccttcagaaatcattataatatgttgatttagggctcaaagtttttttttatatttgaaaaaataaataaaaaccatacTGACCCCAATCTTCAGAGAGGTATTGCATATAACATCATTGTGAGCTGCATAATTAACTGTATATTTATCAagattatttaatgcaatattaaatcattttacaagAAGTAAACGATTTAGACATATAATCAgcttacacaaaaataattaaaagctattttttttaaattaatgattgCAATAAATGATCATGGTTAAAAATGCAGACGTTTGATTTCTACGTTTTCACAGTTCGTTGTGGCAGAGCATTTACAATCTAACAGAACTTTTggtaaaaacttaaaatataaataaatataaataaaaagggtACTTGGAGTCATgaggctcacacacacattacctCTATAGAGTAATGCAGGGCTGAGGAAGCAGGGTGAAGGGACAGATTCTGGAAGGGCTTGATCTGAGGTGCCTGCCATCCTCCTGCTTCAGACCAGCTGACTGTCAGCATGTGGTCTGTAAACTGCTTGCCGAACACAAGGGTTGAGGGGTCCGGCTTTGGACTCGGTACGGATTTCCTCTCTATGGTAAGATCTGCAGCCTGACACAAACAAccggggagagagagacagagaaagagggagagaaaacgAAAAGACAGAGAGGGGCGGGGAGTAAAGCGGGCACGTGGAGAGAggtttattcattataattgattgcacatgcattttaaaaattaatctgGATTCGTCATGCCAGTCAAGCTCTTATGGAAATTGAAGTAAATTAAATTGTGGTGagaagagagggaaaaaaaaaaaaaaaaaaaaaaaaggttgcaaGAAAGCAaaagcacaaagaaaagagacGTCAGAACCCACAAGGCGACACCGTGACCTGCTTAACACTTCAGAAAATGCAACTCAGGGTGAGCCGGAAATCATGAACTTGTGATCGTGAACTCTGagtgaaCTTGAAGGAGGAGCTGACGAACCGCAACGACCCACACGACAGGGAGAGAGGCTGAAGAAAGCGCCCATTCAGGACCTTAAAACACAGATACAGAGCGTGACTTCAGCCGCTTCCTTTCATGGCTCAATCAGACACGGAGCATGTTGACAGCTGTTGTTCAGCCCTCGTGAGATGTGAAGGTTGAGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28062 lncRNA upstream 14292 10811824 ~ 10812786 (+) False G18817
TU28064 lncRNA upstream 14292 10811824 ~ 10812786 (+) True G18817
TU28048 lncRNA upstream 37412 10787355 ~ 10789666 (+) False G18807
TU28045 lncRNA upstream 37412 10787616 ~ 10789666 (+) True G18807
TU28023 lncRNA upstream 124272 10702294 ~ 10702806 (+) True G18794
TU28101 lncRNA downstream 91525 10920360 ~ 10920871 (+) True G18847
TU28072 lncRNA downstream 103536 10932371 ~ 10970464 (+) True G18824
XR_006248664.1 lncRNA downstream 183374 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 192493 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 248209 11077044 ~ 11078732 (+) True G18894
XM_043233860.1 mRNA upstream 6131 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA upstream 6131 10817895 ~ 10820947 (+) False ifi35
XM_043225671.1 mRNA upstream 57681 10711327 ~ 10769397 (+) True cacng2a
XM_043231867.1 mRNA upstream 128538 10693698 ~ 10698540 (+) True LOC122333995
XM_043235903.1 mRNA upstream 148397 10672523 ~ 10678681 (+) True eif3d
XM_043229804.1 mRNA downstream 5752 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA downstream 6897 10835732 ~ 10842507 (+) False kcna7
XM_043235139.1 mRNA downstream 45402 10874237 ~ 10885623 (+) True LOC122341641
XM_043233932.1 mRNA downstream 119843 10948678 ~ 10954729 (+) True akt1s1
XM_043231371.1 mRNA downstream 149314 10978149 ~ 11006634 (+) True mybpc2a
TU28036 other upstream 45225 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 45225 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 792611 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1027323 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1077198 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 333519 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 504924 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 540058 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 944366 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 944366 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile